Evidence map›Paper›PMID 35614407›Full record

ArticleBMC cancer2022

Gene alternation of cerebrospinal fluid in patients with leptomeningeal metastases of lung adenocarcinoma using next-generation sequencing.

Hainan Yang, Lei Wen, Yingying Pan, Changguo Shan, Weiping Hong, Hui Wang, Cheng Zhou, Linbo Cai, Caicun Zhou

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hainan YangDepartment of Oncology, Shanghai Pulmonary Hospital &Thoracic Cancer Institute, School of Medicine, Tongji University, Shanghai, 200092, China.
Lei WenDepartment of Oncology, Guangdong Sanjiu Brain Hospital, Guangzhou, 510510, China.
Yingying PanDepartment of Oncology, Shanghai Pulmonary Hospital &Thoracic Cancer Institute, School of Medicine, Tongji University, Shanghai, 200092, China.
Changguo ShanDepartment of Oncology, Guangdong Sanjiu Brain Hospital, Guangzhou, 510510, China.
Weiping HongDepartment of Oncology, Guangdong Sanjiu Brain Hospital, Guangzhou, 510510, China.
Hui WangDepartment of Oncology, Guangdong Sanjiu Brain Hospital, Guangzhou, 510510, China.
Cheng ZhouDepartment of Oncology, Guangdong Sanjiu Brain Hospital, Guangzhou, 510510, China.
Linbo CaiDepartment of Oncology, Guangdong Sanjiu Brain Hospital, Guangzhou, 510510, China. cailinbo999@163.com.
Caicun ZhouDepartment of Oncology, Shanghai Pulmonary Hospital &Thoracic Cancer Institute, School of Medicine, Tongji University, Shanghai, 200092, China. dr_caicunzhou@126.com.
Guangdong 999 Brain Hospital · CNTongji University · CNShanghai Pulmonary Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEpidermal growth factor receptor tyrosine kinase inhibitors (EGFR-TKIs) provide a better prognosis in EGFR-mutant non-small cell lung cancer (NSCLC). Nevertheless, the outcome of leptomeningeal metastasis (LM) remains poor. In addition, due to limited access to intracranial tumour tissue, gene alterations associated with leptomeningeal metastasis from lung adenocarcinoma (LM-LUAD) are unclear.

methodsForty-five patients with LM-LUAD from May 2019 to June 2021 in Guangdong Sanjiu Brain Hospital were enrolled in this study. Seventy-five percent (34/45) of patients with LM harbored EGFR mutations, and patients with progressive disease (PD) of LM had 3rd-generation EGFR-TKI therapy and were defined as Cohort 1; those without 3rd-generation EGFR-TKI therapy were defined as Cohort 2. Next-generation targeted panel sequencing (NGS) was performed in each cerebrospinal fluid (CSF) sample of the two cohorts, and 9/45 LM-LUAD patients had matched plasma (PLA).

resultsThe common gene alterations discovered in the CSF of LM-LUAD were EGFR mutation (34/45, 75%), TP53 (25/45, 56%), CDKN2A (9/45, 20%), ALK (7/45, 16%), CTNNB1 (6/45, 13%), MET (5/45, 11%), APC (4/45, 9%), FGF4 (4/45, 9%), FGF3 (4/45, 9%), ERBB2 (4/45, 9%), and PIK3CG (4/45, 9%). Cooccurring mutations of TP53 and EGFR were found in 49% (22/45) of patients and correlated with poor prognosis. CDKN2A was identified in 20% (9/45) of patients and presented slightly shorter overall survival (OS) than those without (7.1 versus 8.8 months, p = 0.2). Cohort 1 had more genes associated with poor prognosis, consisting of CDK4, CDKN2A, PIK3CG, or PIK3CA, and YES1 and MET were more likely to be detected in cohort 2. The alteration of EGFR was comparable between CSF and matched PLA. Incidences of gene alterations such as CDK4, CDKN2A, MET, SOX2, JAK2, BRAF, and PIK3CG were more likely to be identified in CSF. All mutant allele frequencies (MAF) were much higher in CSF than in matched PLA.

conclusionsCSF could be a potential candidate for the genetic profiling of LM-LUAD, demonstrating the genetic characteristics of LM in EGFR-mutated lung adenocarcinoma on diverse EGFR-TKI therapies.

Indexed as

Adenocarcinoma of LungCarcinoma, Non-Small-Cell LungCerebrospinal FluidLung NeoplasmsMeningeal CarcinomatosisErbB ReceptorsHigh-Throughput Nucleotide SequencingHumansMutationProtein Kinase InhibitorsErbB ReceptorsProtein Kinase InhibitorsCerebrospinal fluidEpidermal growth factor receptor (EGFR) tyrosine kinase inhibitorGenotypingLeptomeningeal metastasesLung adenocarcinoma

Identifiers

PMID35614407
PMCPMC9131527
OpenAlexW4281488859

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.