Evidence map›Paper›PMID 35614200›Full record

ArticleEuropean journal of human genetics : EJHG2022

An integrated multiomic approach as an excellent tool for the diagnosis of metabolic diseases: our first 3720 patients.

Ligia S Almeida, Catarina Pereira, Ruxandra Aanicai, Sabine Schröder, Tomasz Bochinski, Anett Kaune, Alice Urzi, Tania C L S Spohr, Nikenza Viceconte, Sebastian Oppermann and 26 more

Open access · hybridAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. The Multi-Omic Approach to Newborn Screening: Opportunities and Challenges.International journal of neonatal screening · 2024
    Review
  13. Review
  14. Article
  15. Review
  16. 2022: the year that was in the European Journal of Human Genetics.European journal of human genetics : EJHG · 2023
    Article
  17. Article
  18. Article
  19. Proteomics in Inherited Metabolic Disorders.International journal of molecular sciences · 2022
    Review
  20. Guidelines, guidelines everywhere-and still I'm not sure what to do.European journal of human genetics : EJHG · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 8 institutions in 6 countries.

Ligia S AlmeidaCENTOGENE GmbH, 18055, Rostock, Germany.
Catarina PereiraCENTOGENE GmbH, 18055, Rostock, Germany.
Ruxandra AanicaiCENTOGENE GmbH, 18055, Rostock, Germany.
Sabine SchröderCENTOGENE GmbH, 18055, Rostock, Germany.
Tomasz BochinskiCENTOGENE GmbH, 18055, Rostock, Germany.
Anett KauneCENTOGENE GmbH, 18055, Rostock, Germany.
Alice UrziCENTOGENE GmbH, 18055, Rostock, Germany.
Tania C L S SpohrCENTOGENE GmbH, 18055, Rostock, Germany.
Nikenza ViceconteCENTOGENE GmbH, 18055, Rostock, Germany.
Sebastian OppermannCENTOGENE GmbH, 18055, Rostock, Germany.
Mohammed AlaselCENTOGENE GmbH, 18055, Rostock, Germany.
Saeedeh EbadatCENTOGENE GmbH, 18055, Rostock, Germany.
Sana IftikharCENTOGENE GmbH, 18055, Rostock, Germany.
Eresha JasingeLady Ridgeway Hospital for Children, Colombo, Sri Lanka.
Solaf M ElsayedMedical Genetics Department, Faculty of Medicine, Ain Shams University, Cairo, Egypt.ORCID 0000-0003-3054-9929
Hoda TomoumDepartment of Pediatrics, Faculty of Medicine, Ain Shams University, Cairo, Egypt.ORCID 0000-0002-7781-7532
Iman MarzoukAlexandria University Children Hospital, Alexandria, Egypt.
Anil B JalanNavi Mumbai Institute of Research In Mental And Neurological Handicap (NIRMAN) / Pediatric Geneticist, Navi Mumbai, India.
Agne CerkauskaiteFaculty of Medicine, Vilnius University, Vilnius, Lithuania.
Rimante CerkauskieneFaculty of Medicine, Vilnius University, Vilnius, Lithuania.ORCID 0000-0002-1971-5044
Tinatin TkemaladzeDepartment of Molecular and Medical Genetics, Tbilisi State Medical University, Tbilisi, Georgia.ORCID 0000-0003-1924-6695
Anjum Muhammad NadeemPediatric Gastroenterology, Hepatology and Nutrition, the Children's Hospital and Institute of Child Health, Lahore, Pakistan.
Iman Gamal El Din MahmoudCairo University Children Hospital (Abu El Reesh Children's Hospital), Metabolic, Neurology, Cairo, Egypt.ORCID 0000-0003-4853-1874
Fawzia Amer MossadCairo University Children Hospital (Abu El Reesh Children's Hospital), Metabolic, Neurology, Cairo, Egypt.
Mona KamelCairo University Children Hospital (Abu El Reesh Children's Hospital), Metabolic, Neurology, Cairo, Egypt.
Laila Abdel SelimCairo University Children Hospital (Abu El Reesh Children's Hospital), Metabolic, Neurology, Cairo, Egypt.
Huma Arshad CheemaPediatric Gastroenterology, Hepatology and Nutrition, the Children's Hospital and Institute of Child Health, Lahore, Pakistan.
Omid PakniaCENTOGENE GmbH, 18055, Rostock, Germany.
Claudia CozmaCENTOGENE GmbH, 18055, Rostock, Germany.
Carlos Juaristi-ManriqueCENTOGENE GmbH, 18055, Rostock, Germany.
Pilar Guatibonza-MorenoCENTOGENE GmbH, 18055, Rostock, Germany.
Tobias BöttcherCENTOGENE GmbH, 18055, Rostock, Germany.
Florian VogelCENTOGENE GmbH, 18055, Rostock, Germany.
Jorge Pinto-BastoCENTOGENE GmbH, 18055, Rostock, Germany.
Aida Bertoli-AvellaCENTOGENE GmbH, 18055, Rostock, Germany. aida.bertoli-avella@centogene.com.ORCID 0000-0001-9544-1877
Peter BauerCENTOGENE GmbH, 18055, Rostock, Germany.ORCID 0000-0001-9414-4555
Centogene (Germany) · DECairo University · EGAin Shams University · EGVilnius University · LTAlexandria University · EGBombay Hospital · INLady Ridgeway Hospital for Children · LKTbilisi State Medical University · GE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To present our experience using a multiomic approach, which integrates genetic and biochemical testing as a first-line diagnostic tool for patients with inherited metabolic disorders (IMDs). A cohort of 3720 patients from 62 countries was tested using a panel including 206 genes with single nucleotide and copy number variant (SNV/CNV) detection, followed by semi-automatic variant filtering and reflex biochemical testing (25 assays). In 1389 patients (37%), a genetic diagnosis was achieved. Within this cohort, the highest diagnostic yield was obtained for patients from Asia (57.5%, mainly from Pakistan). Overall, 701 pathogenic/likely pathogenic unique SNVs and 40 CNVs were identified. In 620 patients, the result of the biochemical tests guided variant classification and reporting. Top five diagnosed diseases were: Gaucher disease, Niemann-Pick disease type A/B, phenylketonuria, mucopolysaccharidosis type I, and Wilson disease. We show that integrated genetic and biochemical testing facilitated the decision on clinical relevance of the variants and led to a high diagnostic yield (37%), which is comparable to exome/genome sequencing. More importantly, up to 43% of these patients (n = 610) could benefit from medical treatments (e.g., enzyme replacement therapy). This multiomic approach constitutes a unique and highly effective tool for the genetic diagnosis of IMDs.

Indexed as

DNA Copy Number VariationsMetabolic DiseasesExomeExome SequencingHigh-Throughput Nucleotide SequencingHumansPakistan

Identifiers

PMID35614200
PMCPMC9437014
OpenAlexW4281481287

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.