Evidence map›Paper›PMID 35613595›Full record

ArticleCell reports2022

Oxygen level regulates N-terminal translation elongation of selected proteins through deoxyhypusine hydroxylation.

Yugang Zhang, Dan Su, Julia Zhu, Miao Wang, Yandong Zhang, Qin Fu, Sheng Zhang, Hening Lin

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yugang ZhangDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Dan SuDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Julia ZhuDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Miao WangDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Yandong ZhangDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Qin FuProteomics and Metabolomics Facility, Cornell University, Ithaca, NY 14853, USA.
Sheng ZhangProteomics and Metabolomics Facility, Cornell University, Ithaca, NY 14853, USA.
Hening LinDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA; Howard Hughes Medical Institute, Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA. Electronic address: hl379@cornell.edu.
Cornell University · USHoward Hughes Medical Institute · US

Funding

Metabolite Sensing and Regulation of Protein FunctionR35GM131808 · NIGMS · CORNELL UNIVERSITY · PI LIN, HENING · 2019 to 2023
$1.9M
Acquisition of a Hybrid Quadrupole Time of Flight LC-MS/MS System for the CornellS10OD017992 · OD · CORNELL UNIVERSITY · PI ZHANG, SHENG · 2014 to 2014
$600k
NIGMS NIH HHS R35 GM131808NIH HHS S10 OD017992
6 · The paper itself

Abstract

Hypusine is a post-translational modification on eukaryotic translation initiation factor 5A (eIF5A). The last step of hypusine biosynthesis, deoxyhypusine hydroxylation, is an oxygen-dependent reaction. Here we show that deletion of the deoxyhypusine hydroxylase Lia1 compromises yeast respiration through translation downregulation of selected proteins in the respiration pathway. The translation suppression, because of the lack of deoxyhypusine hydroxylation, mainly affects translation of the N termini of the proteins, independent of the presence of proline residues but likely dependent on the interaction between the N-terminal nascent peptide and the ribosomal peptide exit tunnel. Proteomics and biochemical studies reveal that Lia1 deletion decreases N-terminal translation of proteins involved in mitochondrial respiration, oxidative stress response, and protein folding. Our work uncovers functions of the hypusine modification by considering the substrate requirement of the post-translational modification, highlights the unique challenges of translating the N termini of proteins, and reveals an oxygen-sensing mechanism in eukaryotic cells.

Indexed as

OxygenPeptide Initiation FactorsHydroxylationLysinePeptidesProtein BiosynthesisSaccharomyces cerevisiaedeoxyhypusineLysineOxygenPeptide Initiation FactorsPeptidesCP: MetabolismCP: Molecular biologydeoxyhypusine hydroxylasehypusineoxidative phosphorylationoxygen sensingtranslation

Identifiers

PMID35613595
PMCPMC9218932
OpenAlexW4281400964

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.