Evidence map›Paper›PMID 35613471›Full record

ArticleACS chemical biology2022

Engineered SH2 Domains for Targeted Phosphoproteomics.

Gregory D Martyn, Gianluca Veggiani, Ulrike Kusebauch, Seamus R Morrone, Bradley P Yates, Alex U Singer, Jiefei Tong, Noah Manczyk, Gerald Gish, Zhi Sun and 5 more

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
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  4. Article
  5. Phosphatase SHP2 pathogenic mutations enhance activity by altering conformational sampling.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  9. bioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Article
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  13. Article
  14. Engineering signalling pathways in mammalian cells.Nature biomedical engineering · 2024
    Review
  15. Review
  16. The pathogenic T42A mutation in SHP2 rewires the interaction specificity of its N-terminal regulatory domain.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Gregory D MartynDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S3E1, Canada.ORCID 0000-0002-7373-7834
Gianluca VeggianiDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S3E1, Canada.
Ulrike KusebauchInstitute for Systems Biology, Seattle, Washington 98109, United States.
Seamus R MorroneInstitute for Systems Biology, Seattle, Washington 98109, United States.
Bradley P YatesDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S3E1, Canada.
Alex U SingerDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S3E1, Canada.
Jiefei TongProgram in Cell biology, Hospital for Sick Children, Toronto M5G 0A4, Canada.
Noah ManczykDepartment of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Gerald GishLunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada.
Zhi SunInstitute for Systems Biology, Seattle, Washington 98109, United States.ORCID 0000-0003-3324-6851
Igor KurinovDepartment of Chemistry and Chemical Biology, Cornell University, NE-CAT, Argonne, Illinois 60439, United States.
Frank SicheriDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.ORCID 0000-0002-9824-2117
Michael F MoranDepartment of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Robert L MoritzInstitute for Systems Biology, Seattle, Washington 98109, United States.ORCID 0000-0002-3216-9447
Sachdev S SidhuDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S3E1, Canada.ORCID 0000-0001-7755-5918
University of Toronto · CAInstitute for Systems Biology · USMount Sinai Hospital · CAArgonne National Laboratory · USHospital for Sick Children · CA

Funding

Systems BiologyU19AG023122 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI Thomas Girke, NICHOLAS Joseph SCHORK · 2004 to 2026
$102.6M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Shortening the development cycle time of Trans Proteomic Pipeline tools with high performance computingR01GM087221 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DEUTSCH, ERIC, MORITZ, ROBERT L · 2010 to 2021
$6.0M
Acquisition of Fusion Lumos Orbitrap mass spectrometerS10OD026936 · OD · INSTITUTE FOR SYSTEMS BIOLOGY · PI MORITZ, ROBERT L · 2019 to 2019
$600k
Proteogenomic resource for the development of novel markers for Lyme diseaseR21AI142302 · NIAID · INSTITUTE FOR SYSTEMS BIOLOGY · PI MORITZ, ROBERT L · 2019 to 2020
$522k
CIHR FDN-143277CIHR MOP-93684NIAID NIH HHS R21 AI142302NIA NIH HHS U19 AG023122NIGMS NIH HHS P30 GM124165NIGMS NIH HHS R01 GM087221NIH HHS S10 OD026936
6 · The paper itself

Abstract

A comprehensive analysis of the phosphoproteome is essential for understanding molecular mechanisms of human diseases. However, current tools used to enrich phosphotyrosine (pTyr) are limited in their applicability and scope. Here, we engineered new superbinder Src-Homology 2 (SH2) domains that enrich diverse sets of pTyr-peptides. We used phage display to select a Fes-SH2 domain variant (superFes; sFes

Indexed as

Proteomesrc Homology DomainsHumansMass SpectrometryPhosphotyrosineProtein BindingPhosphotyrosineProteome

Identifiers

PMID35613471
PMCPMC9251651
OpenAlexW4281552569

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.