Evidence map›Paper›PMID 35612785›Full record

ArticleThe New phytologist2022

The tomato cytochrome P450 CYP712G1 catalyses the double oxidation of orobanchol en route to the rhizosphere signalling strigolactone, solanacol.

Yanting Wang, Janani Durairaj, Hernando G Suárez Duran, Robin van Velzen, Kristyna Flokova, Che-Yang Liao, Aleksandra Chojnacka, Stuart MacFarlane, M Eric Schranz, Marnix H Medema and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

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  12. Disruption of the riceProceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Yanting WangPlant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands.ORCID 0000-0003-1970-4158
Janani DurairajBioinformatics Group, Wageningen University, 6708PB, Wageningen, the Netherlands.
Hernando G Suárez DuranBioinformatics Group, Wageningen University, 6708PB, Wageningen, the Netherlands.
Robin van VelzenBiosystematics Group, Wageningen University, 6708PB, Wageningen, the Netherlands.ORCID 0000-0002-6444-7608
Kristyna FlokovaPlant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands.ORCID 0000-0002-5558-0669
Che-Yang LiaoPlant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands.ORCID 0000-0002-9756-3111
Aleksandra ChojnackaPlant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands.
Stuart MacFarlaneCell and Molecular Sciences, the James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.ORCID 0000-0002-6046-4400
M Eric SchranzBiosystematics Group, Wageningen University, 6708PB, Wageningen, the Netherlands.ORCID 0000-0001-6777-6565
Marnix H MedemaBioinformatics Group, Wageningen University, 6708PB, Wageningen, the Netherlands.ORCID 0000-0002-2191-2821
Aalt D J van DijkBioinformatics Group, Wageningen University, 6708PB, Wageningen, the Netherlands.ORCID 0000-0002-8872-5123
Lemeng DongPlant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands.ORCID 0000-0002-1435-1907
Harro J BouwmeesterPlant Hormone Biology Group, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH, Amsterdam, the Netherlands.ORCID 0000-0003-0907-2732
Netherlands Institute for Neuroscience · NLWageningen University & Research · NLCentre for BioSystems Genomics · NLJames Hutton Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strigolactones (SLs) are rhizosphere signalling molecules and phytohormones. The biosynthetic pathway of SLs in tomato has been partially elucidated, but the structural diversity in tomato SLs predicts that additional biosynthetic steps are required. Here, root RNA-seq data and co-expression analysis were used for SL biosynthetic gene discovery. This strategy resulted in a candidate gene list containing several cytochrome P450s. Heterologous expression in Nicotiana benthamiana and yeast showed that one of these, CYP712G1, can catalyse the double oxidation of orobanchol, resulting in the formation of three didehydro-orobanchol (DDH) isomers. Virus-induced gene silencing and heterologous expression in yeast showed that one of these DDH isomers is converted to solanacol, one of the most abundant SLs in tomato root exudate. Protein modelling and substrate docking analysis suggest that hydroxy-orbanchol is the likely intermediate in the conversion from orobanchol to the DDH isomers. Phylogenetic analysis demonstrated the occurrence of CYP712G1 homologues in the Eudicots only, which fits with the reports on DDH isomers in that clade. Protein modelling and orobanchol docking of the putative tobacco CYP712G1 homologue suggest that it can convert orobanchol to similar DDH isomers as tomato.

Indexed as

Solanum lycopersicumCatalysisCytochrome P-450 Enzyme SystemHeterocyclic Compounds, 3-RingLactonesNicotianaPhylogenyPlant Growth RegulatorsRhizosphereSaccharomyces cerevisiae(4-hydroxy-5,8-dimethyl-3-(4-methyl-5-oxo-2,5-dihydrofuran-2-yloxy)methylene)-3a,4-dihydro-3H-indeno(1,2-b)furan-2(8bH)-oneCytochrome P-450 Enzyme SystemGR24 strigolactoneHeterocyclic Compounds, 3-RingLactonesorobancholPlant Growth RegulatorsCYP712G1orobancholoxidationsolanacolstrigolactone biosynthesistomato (Solanum lycopersicum)

Identifiers

PMID35612785
PMCPMC9542622
OpenAlexW4281565507

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.