Evidence map›Paper›PMID 35612745›Full record

ReviewMethods in molecular biology (Clifton, N.J.)2022

Comprehensive Interactome Mapping of Nuclear Receptors Using Proximity Biotinylation.

Lynda Agbo, Sophie Anne Blanchet, Pata-Eting Kougnassoukou Tchara, Amélie Fradet-Turcotte, Jean-Philippe Lambert

Abstract readReview
PubMed Publisher
In one paragraph

Review in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Identification of multiple novel procoagulant plasma ligands for stabilin-2.Journal of thrombosis and haemostasis : JTH · 2025
    Article
  4. Venous thromboembolic disease genetics: from variants to function.Journal of thrombosis and haemostasis : JTH · 2024
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Lynda AgboDepartment of Molecular Medicine, Cancer Research Center and Big Data Research Center, Université Laval, Québec, QC, Canada.
Sophie Anne BlanchetOncology Division, CHU de Québec-Université Laval Research Center, Québec, QC, Canada.
Pata-Eting Kougnassoukou TcharaDepartment of Molecular Medicine, Cancer Research Center and Big Data Research Center, Université Laval, Québec, QC, Canada.
Amélie Fradet-TurcotteOncology Division, CHU de Québec-Université Laval Research Center, Québec, QC, Canada. Amelie.Fradet-Turcotte@crchudequebec.ulaval.ca.
Jean-Philippe LambertDepartment of Molecular Medicine, Cancer Research Center and Big Data Research Center, Université Laval, Québec, QC, Canada. Jean-Philippe.Lambert@crchudequebec.ulaval.ca.
Université Laval · CA

Funding

CIHR PJT-152948CIHR PJT-168969
6 · The paper itself

Abstract

Nuclear receptors, including hormone receptors, perform their cellular activities by modulating their protein-protein interactions. They engage with specific ligands and translocate to the nucleus, where they bind the DNA and activate extensive transcriptional programs. Therefore, gaining a comprehensive overview of the protein-protein interactions they establish requires methods that function effectively throughout the cell with fast dynamics and high reproducibility. Focusing on estrogen receptor alpha (ESR1), the founding member of the nuclear receptor family, this chapter describes a new lentiviral system that allows the expression of TurboID-hemagglutinin (HA)-2 × Strep tagged proteins in mammalian cells to perform fast proximity biotinylation assays. Key validation steps for these reagents and their use in interactome mapping experiments in two distinct breast cancer cell lines are described. Our protocol enabled the quantification of ESR1 interactome generated by cellular contexts that were hormone-sensitive or not.

Indexed as

HormonesReceptors, Cytoplasmic and NuclearAnimalsBiotinylationMammalsProtein Interaction MappingReproducibility of ResultsHormonesReceptors, Cytoplasmic and NuclearInteractome mappingMass spectrometryNuclear receptorProteomicsProximity biotinylationTurboID

Identifiers

PMID35612745
OpenAlexW4285158568

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.