Evidence map›Paper›PMID 35612630›Full record

ArticleApplied microbiology and biotechnology2022

A conserved subunit vaccine designed against SARS-CoV-2 variants showed evidence in neutralizing the virus.

K M Kaderi Kibria, Md Omar Faruque, Md Shaid Bin Islam, Hedayet Ullah, Shafi Mahmud, Mojnu Miah, Amani Ali Saleh

Open access · bronzeAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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  10. A novel vaccine based on SARS-CoV-2 CD4Scientific reports · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

K M Kaderi KibriaDepartment of Biotechnology and Genetic Engineering, Faculty of Life Science, Mawlana Bhashani Science and Technology University, Tangail, 1902, Bangladesh. km_kibria@yahoo.com.ORCID http://orcid.org/0000-0002-8741-2918
Md Omar Faruque *Department of Biotechnology and Genetic Engineering, Faculty of Life Science, Mawlana Bhashani Science and Technology University, Tangail, 1902, Bangladesh.
Md Shaid Bin Islam *Department of Biotechnology and Genetic Engineering, Faculty of Life Science, Mawlana Bhashani Science and Technology University, Tangail, 1902, Bangladesh.
Hedayet Ullah *Department of Biotechnology and Genetic Engineering, Faculty of Life Science, Mawlana Bhashani Science and Technology University, Tangail, 1902, Bangladesh.
Shafi MahmudDivision of Genome Sciences and Cancer, The John Curtin School of Medical Research, and The Shine-Dalgarno Centre for RNA Innovation, The Australian National University, Canberra, ACT 2601, Australia.
Mojnu MiahInfectious Diseases Division, International Centre for Diarrhoeal Diseases Research Bangladesh (icddr,b), Dhaka, Bangladesh.
Amani Ali SalehVirology Department, Veterinary Serum and Vaccine Research Institute (VSVRI), Cairo, Egypt.
Mawlana Bhashani Science and Technology University · BDAustralian National University · AUInternational Centre for Diarrhoeal Disease Research · BDVeterinary Serum and Vaccine Research Institute · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Novel coronavirus (SARS-CoV-2) leads to coronavirus disease 19 (COVID-19), declared as a pandemic that outbreaks within almost 225 countries worldwide. For the time being, numerous mutations have been reported that led to the generation of numerous variants spread more rapidly. This study aims to establish an efficient multi-epitope subunit vaccine that could elicit both T-cell and B-cell responses sufficient to recognize three confirmed surface proteins of the virus. The sequences of the viral surface proteins, e.g., an envelope protein (E), membrane glycoprotein (M), and S1 and S2 domain of spike surface glycoprotein (S), were analyzed by an immunoinformatic approach. Top immunogenic epitopes have been selected based on the assessment of the affinity with MHC class-I and MHC class-II, population coverage, along with conservancy among wild type and new variants of SARS-CoV-2 genomes. Molecular docking and molecular dynamic simulation suggest that the proposed top peptides have the potential to interact with the highest number of both the MHC class I and MHC class II. The epitopes were assembled by the appropriate linkers to form a multi-epitope vaccine. Epitopes used in the vaccine construct are conserved in all the variants evolved till now. This in silico-designed multi-epitope vaccine is highly immunogenic and induces levels of SARS-CoV2-neutralizing antibodies in mice, which is detected by inhibition of cytopathic effect in Vero cell monolayer. Further studies are required to improve its efficiency in the prevention of virus replication in lung tissue, in addition to safety validation as a step for human application to combat SARS-CoV-2 variants. KEY POINTS: • We discovered five T-cell epitopes from three surface proteins of SARS-CoV-2. • These are conserved in the wild-type virus and variants, e.g., beta, delta, and omicron. • The multi-epitope vaccine can induce IgG in mice that can neutralize the virus.

Indexed as

COVID-19Viral VaccinesAnimalsCOVID-19 VaccinesEpitopes, B-LymphocyteEpitopes, T-LymphocyteHumansMiceMolecular Docking SimulationRNA, ViralSARS-CoV-2Spike Glycoprotein, CoronavirusVaccines, SubunitCOVID-19 VaccinesEpitopes, B-LymphocyteEpitopes, T-LymphocyteRNA, ViralSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Vaccines, SubunitViral VaccinesEnvelope proteinEpitope-based vaccineImmunoinformaticsMembrane glycoproteinSARS-CoV-2Spike surface glycoprotein, Immunogenic, Neutralizing antibody

Identifiers

PMID35612630
PMCPMC9130996
OpenAlexW4281482529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.