Evidence map›Paper›PMID 35611334›Full record

ArticlebioRxiv : the preprint server for biology2022

Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than

Bryan Thornlow, Alexander Kramer, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S Hinrichs, Robert Lanfear, Yatish Turakhia, Russell Corbett-Detig

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Bryan ThornlowDepartment of Biomolecular Engineering, University of California, Santa Cruz; Santa Cruz, CA 95064, USA.
Alexander KramerDepartment of Biomolecular Engineering, University of California, Santa Cruz; Santa Cruz, CA 95064, USA.
Cheng YeDepartment of Electrical and Computer Engineering, University of California, San Diego; San Diego, CA 92093, USA.
Nicola De MaioEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus; Cambridge CB10 1SD, UK.
Jakob McBroomeDepartment of Biomolecular Engineering, University of California, Santa Cruz; Santa Cruz, CA 95064, USA.
Angie S HinrichsGenomics Institute, University of California, Santa Cruz; Santa Cruz, CA 95064, USA.
Robert LanfearDepartment of Ecology and Evolution, Research School of Biology, Australian National University; Canberra, ACT 2601, Australia.
Yatish TurakhiaDepartment of Electrical and Computer Engineering, University of California, San Diego; San Diego, CA 92093, USA.
Russell Corbett-DetigDepartment of Biomolecular Engineering, University of California, Santa Cruz; Santa Cruz, CA 95064, USA.

Funding

Origins, Functional, and Evolutionary Consequences of Genomic VariationR35GM128932 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Russell Corbett-Detig · 2018 to 2026
$3.2M
UC Santa Cruz Training Program In Genomic SciencesT32HG008345 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI BROOKS, ANGELA NORIE, GREEN, RICHARD EDWARD · 2015 to 2020
$1.4M
Evolutionary dynamics of tRNA genesF31HG010584 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI THORNLOW, BRYAN PATRICK · 2019 to 2021
$86k
NHGRI NIH HHS F31 HG010584NHGRI NIH HHS T32 HG008345NIGMS NIH HHS R35 GM128932
6 · The paper itself

Abstract

Phylogenetics has been foundational to SARS-CoV-2 research and public health policy, assisting in genomic surveillance, contact tracing, and assessing emergence and spread of new variants. However, phylogenetic analyses of SARS-CoV-2 have often relied on tools designed for

Identifiers

PMID35611334
PMCPMC9128781

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.