Evidence map›Paper›PMID 35611186›Full record

ArticleCancer research communications2021

C Alston James, Peter Ronning, Darren Cullinan, Kelsy C Cotto, Erica K Barnell, Katie M Campbell, Zachary L Skidmore, Dominic E Sanford, S Peter Goedegebuure, William E Gillanders and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cancer research communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

C Alston JamesDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Peter RonningDepartment of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
Darren CullinanDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Kelsy C CottoMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
Erica K BarnellDepartment of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
Katie M CampbellMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
Zachary L SkidmoreMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA.
Dominic E SanfordDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
S Peter GoedegebuureDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
William E GillandersDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Obi L GriffithDepartment of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
William G HawkinsDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Malachi GriffithDepartment of Medicine, Washington University School of Medicine, St. Louis, MO, USA.
Washington University in St. Louis · USJames S. McDonnell Foundation · US

Funding

SURGICAL ONCOLOGY TRAINING GRANTT32CA009621 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN, William E. Gillanders · 1988 to 2026
$12.9M
Washington University SPORE in Pancreatic CancerP50CA196510 · NCI · WASHINGTON UNIVERSITY · PI HAWKINS, WILLIAM G · 2016 to 2020
$10.9M
Standardized and Genome-Wide Clinical Interpretation of Complex Genotypes for Cancer Precision MedicineU24CA237719 · NCI · WASHINGTON UNIVERSITY · PI GRIFFITH, OBI L. · 2019 to 2023
$3.8M
Informatics tools for identification, prioritization and clinical application of neoantigensU01CA248235 · NCI · WASHINGTON UNIVERSITY · PI GRIFFITH, MALACHI · 2020 to 2022
$1.3M
Integrated Analysis & Interpretation of Whole Genome Exome & Transcriptome SequenR00HG007940 · NHGRI · WASHINGTON UNIVERSITY · PI GRIFFITH, MALACHI · 2017 to 2019
$724k
INTEGRATED ANALYSIS & INTERPRETATION OF WHOLE GENOME, EXOME & TRANSCRIPTOME SEQUENCE DATA IN CANCERK99HG007940 · NHGRI · WASHINGTON UNIVERSITY · PI GRIFFITH, MALACHI · 2015 to 2016
$264k
NCI NIH HHS P50 CA196510NCI NIH HHS T32 CA009621NCI NIH HHS U01 CA248235NCI NIH HHS U24 CA237719NHGRI NIH HHS K99 HG007940NHGRI NIH HHS R00 HG007940
6 · The paper itself

Abstract

Allogeneic cancer vaccines are designed to induce antitumor immune responses with the goal of impacting tumor growth. Typical allogeneic cancer vaccines are produced by expansion of established cancer cell lines, transfection with vectors encoding immunostimulatory cytokines, and lethal irradiation. More than 100 clinical trials have investigated the clinical benefit of allogeneic cancer vaccines in various cancer types. Results show limited therapeutic benefit in clinical trials and currently there are no FDA approved allogeneic cancer vaccines. We used recently developed bioinformatics tools including the pVAC-seq suite of software tools to analyze DNA/RNA sequencing data from the TCGA to examine the repertoire of antigens presented by a typical allogeneic cancer vaccine, and to simulate allogeneic cancer vaccine clinical trials. Specifically, for each simulated clinical trial we modeled the repertoire of antigens presented by allogeneic cancer vaccines consisting of three hypothetical cancer cell lines to 30 patients with the same cancer type. Simulations were repeated ten times for each cancer type. Each tumor sample in the vaccine and the vaccine recipient was subjected to HLA typing, differential expression analyses for tumor associated antigens (TAAs), germline variant calling, and neoantigen prediction. These analyses provided a robust, quantitative comparison between potentially beneficial TAAs and neoantigens versus distracting antigens present in the allogeneic cancer vaccines. We observe that distracting antigens greatly outnumber shared TAAs and neoantigens, providing one potential explanation for the lack of observed responses to allogeneic cancer vaccines. This analysis provides additional rationale for the redirection of efforts towards a personalized cancer vaccine approach.

Indexed as

Cancer VaccinesHematopoietic Stem Cell TransplantationNeoplasmsAntigens, NeoplasmEpitopesHumansAntigens, NeoplasmCancer VaccinesEpitopes

Identifiers

PMID35611186
PMCPMC9126504
OpenAlexW3214765005

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.