Evidence map›Paper›PMID 35610422›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Methods for Assessing Circadian Rhythms and Cell Cycle in Intestinal Enteroids.

Miri Park, Yuhui Cao, Christian I Hong

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Journal of microbiology and biotechnology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Miri Park *Department of Pharmacology and Systems Physiology, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Yuhui Cao *Department of Pharmacology and Systems Physiology, University of Cincinnati College of Medicine, Cincinnati, OH, USA.
Christian I HongDepartment of Pharmacology and Systems Physiology, University of Cincinnati College of Medicine, Cincinnati, OH, USA. christian.hong@uc.edu.

Funding

Organoids as a Model System for Studying Gastrointestinal DiseaseU19AI116491 · NIAID · UNIVERSITY OF CINCINNATI · PI ZAVROS, YANA · 2015 to 2019
$4.6M
Roles of circadian rhythms in gastrointestinal systemsR01DK117005 · NIDDK · UNIVERSITY OF CINCINNATI · PI HONG, CHRISTIAN I · 2018 to 2022
$1.8M
(PQ6) Roles of circadian rhythms in tumor developmentR21CA227379 · NCI · UNIVERSITY OF CINCINNATI · PI HONG, CHRISTIAN I · 2018 to 2019
$378k
NCI NIH HHS R21 CA227379NIAID NIH HHS U19 AI116491NIDDK NIH HHS R01 DK117005
6 · The paper itself

Abstract

Endogenous circadian clocks play a key role in regulating a vast array of biological processes from cell cycle to metabolism, and disruption of circadian rhythms exacerbates a range of human ailments including cardiovascular, metabolic, and gastrointestinal diseases. Determining the state of a patient's circadian rhythms and clock-controlled signaling pathways has important implications for precision and personalized medicine, from improving the diagnosis of circadian-related disorders to optimizing the timing of drug delivery. Patient-derived 3-dimensional enteroids or in vitro "mini gut" is an attractive model uncovering human- and patient-specific circadian target genes that may be critical for personalized medicine. Here, we introduce several procedures to assess circadian rhythms and cell cycle dynamics in enteroids through time course sample collection methods and assay techniques including immunofluorescence, live cell confocal microscopy, and bioluminescence. These methods can be applied to evaluate the state of circadian rhythms and circadian clock-gated cell division cycles using mouse and human intestinal enteroids.

Indexed as

Circadian ClocksCircadian RhythmAnimalsCell CycleCell DivisionHumansMiceBioluminescence assayCell cycleCircadian rhythmImmunofluorescenceIntestinal enteroidsTime course sampling

Identifiers

PMID35610422
PMCPMC11467808

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.