Evidence map›Paper›PMID 35608627›Full record

ArticleThe Journal of membrane biology2022

Ratio of Hydrophobic-Hydrophilic and Positive-Negative Residues at Lipid-Water-Interface Influences Surface Expression and Channel Gating of TRPV1.

Somdatta Saha, Sushama Mohanta, Rashmita Das, Ritesh Dalai, Divyanshi, Nikhil Tiwari, Ankit Tiwari, Abhishek Kumar, Chandan Goswami

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Article in The Journal of membrane biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Somdatta Saha *School of Biological Sciences, National Institute of Science Education and Research, Jatni Campus, Bhubaneswar, Orissa, 752050, India.
Sushama Mohanta *School of Biological Sciences, National Institute of Science Education and Research, Jatni Campus, Bhubaneswar, Orissa, 752050, India.
Rashmita DasSchool of Biological Sciences, National Institute of Science Education and Research, Jatni Campus, Bhubaneswar, Orissa, 752050, India.
Ritesh DalaiSchool of Biological Sciences, National Institute of Science Education and Research, Jatni Campus, Bhubaneswar, Orissa, 752050, India.
DivyanshiSchool of Biological Sciences, National Institute of Science Education and Research, Jatni Campus, Bhubaneswar, Orissa, 752050, India.
Nikhil TiwariSchool of Biological Sciences, National Institute of Science Education and Research, Jatni Campus, Bhubaneswar, Orissa, 752050, India.
Ankit TiwariSchool of Biological Sciences, National Institute of Science Education and Research, Jatni Campus, Bhubaneswar, Orissa, 752050, India.
Abhishek KumarInstitute of Bioinformatics, International Technology Park, Bangalore, 560066, India.
Chandan GoswamiSchool of Biological Sciences, National Institute of Science Education and Research, Jatni Campus, Bhubaneswar, Orissa, 752050, India. chandan@niser.ac.in.
Homi Bhabha National Institute · INNational Institute of Science Education and Research · INManipal Academy of Higher Education · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During evolution, TRPV1 has lost, retained or selected certain residues at Lipid-Water-Interface (LWI) and formed specific patterns there. The ratio of "hydrophobic-hydrophilic" and "positive-negative-charged" residues at the inner LWI remains conserved throughout vertebrate evolution and plays important role in regulating TRPV1 trafficking and localization. Arg575 is an important residue as Arg575Asp mutant has reduced surface expression, co-localization with lipid raft markers, cell area and increased cell lethality. This lethality is most likely due to the disruption of the ratio between positive-negative charges caused by the mutation. Such lethality can be rescued by either using TRPV1-specfic inhibitor 5'-IRTX or by restoring the positive-negative charge ratio at that position, i.e. by introducing Asp576Arg mutation in Arg575Asp backbone. We propose that Arg575Asp mutation confers TRPV1 in a "constitutive-open-like" condition. These findings have broader implication in understanding the molecular evolution of thermo-sensitive ion channels and the micro-environments involved in processes that goes erratic in different diseases. The segment of TRPV1 that is present at the inner lipid-water-interface (LWI) has a specific pattern of amino acid combinations. The overall ratio of +ve charge /-ve charge and the ratio of hydrophobicity/hydrophilicity remain constant throughout the vertebrate evolution (ca 450 million years). This specific pattern is not observed in the outer LWI region of TRPV1.

Indexed as

TRPV Cation ChannelsWaterHydrophobic and Hydrophilic InteractionsLipidsMembrane MicrodomainsLipidsTRPV Cation ChannelsWaterAmino acid patternCapsaicinChannelopathyLipid raftLipid–Water-InterfaceMolecular evolution

Identifiers

PMID35608627
OpenAlexW4282916551

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.