Evidence map›Paper›PMID 35608550›Full record

ReviewEmerging infectious diseases2022

Antimicrobial-Resistant Shigella spp. in San Diego, California, USA, 2017-2020.

Thaidra Gaufin, Jill Blumenthal, Claudia Ramirez-Sanchez, Sanjay Mehta, David T Pride, Joshua Fierer, Jeffrey D Jenks

Open access · diamondAbstract readReview
In one paragraph

Review in Emerging infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Human vaccines & immunotherapeutics · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. International journal of molecular sciences · 2024
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Clinical Prediction Rule to Guide Diagnostic Testing forOpen forum infectious diseases · 2023
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Thaidra Gaufin
Jill Blumenthal
Claudia Ramirez-Sanchez
Sanjay Mehta
David T Pride
Joshua Fierer
Jeffrey D Jenks
Sansum Medical Clinic · USDurham County Department of Public Health · USUniversity of California, San Diego · US

Funding

RESEARCH IN INFECTIOUS DISEASEST32AI007036 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NIZET, VICTOR · 1985 to 2025
$9.2M
NIAID NIH HHS T32 AI007036
6 · The paper itself

Abstract

Annually, Shigella spp. cause ≈188 million cases of diarrheal disease globally, including 500,000 cases in the United States; rates of antimicrobial resistance are increasing. To determine antimicrobial resistance and risk factors in San Diego, California, USA, we retrospectively reviewed cases of diarrheal disease caused by Shigella flexneri and S. sonnei diagnosed during 2017-2020. Of 128 evaluable cases, S. flexneri was slightly more common than S. sonnei; most cases were in persons who were gay or bisexual cisgender men, were living with HIV, were unhoused, or used methamphetamines. Overall, rates of resistance to azithromycin, fluoroquinolones, ampicillin, and trimethoprim/sulfamethoxazole (TMP/SMX) were comparable to the most recent national data reported from the Centers for Disease Control and Prevention; 55% of isolates were resistant to azithromycin, 23% to fluoroquinolones, 70% to ampicillin, and 83% to TMP/SMX. The rates that we found for TMP/SMX were slightly higher than those in national data.

Indexed as

Anti-Infective AgentsDysentery, BacillaryShigellaAmpicillinAnti-Bacterial AgentsAzithromycinCaliforniaDiarrheaDrug Resistance, BacterialFluoroquinolonesHumansMaleMicrobial Sensitivity TestsRetrospective StudiesShigella sonneiTrimethoprim, Sulfamethoxazole Drug CombinationAmpicillinAnti-Bacterial AgentsAnti-Infective AgentsAzithromycinFluoroquinolonesTrimethoprim, Sulfamethoxazole Drug CombinationAMRantibiotic resistanceantimicrobial resistancebacteriaCaliforniaGBM/transgenderinfectious diarrheamen who have sex with menmethamphetamine useMSMSan DiegoShigella flexneriShigella sonneiunhousedUSA

Identifiers

PMID35608550
PMCPMC9155871
OpenAlexW4280592354

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.