Evidence map›Paper›PMID 35608266›Full record

ArticleAmerican journal of physiology. Lung cellular and molecular physiology2022

Single-cell RNA sequencing and binary hierarchical clustering define lung interstitial macrophage heterogeneity in response to hypoxia.

Nzali V Campbell, Claudia Mickael, Sushil Kumar, Hui Zhang, Ian L Campbell, Austin E Gillen, Caio O Trentin, Katrina Diener, Bifeng Gao, Vitaly O Kheyfets and 6 more

Open access · hybridAbstract read
In one paragraph

Article in American journal of physiology. Lung cellular and molecular physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Interstitial macrophage phenotypes inFrontiers in immunology · 2024
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Nzali V CampbellDepartment of Pediatrics, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.ORCID 0000-0002-2778-7347
Claudia MickaelDepartment of Medicine-Pulmonary Sciences & Critical Care, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
Sushil KumarDepartment of Pediatrics, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
Hui ZhangDepartment of Pediatrics, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
Ian L CampbellSchool of Humanities and Science, Stanford University, Stanford, California.
Austin E GillenDivision of Hematology, Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, Colorado.
Caio O TrentinDepartment of Medicine-Pulmonary Sciences & Critical Care, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
Katrina DienerDepartment of Medicine-Pulmonary Sciences & Critical Care, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
Bifeng GaoDepartment of Medicine-Pulmonary Sciences & Critical Care, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
Vitaly O KheyfetsDepartment of Pediatrics, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
Sue GuDepartment of Medicine-Pulmonary Sciences & Critical Care, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
Rahul KumarDivision of Hematology, Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, Colorado.
Tzu PhangDepartment of Medicine, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
R Dale BrownDepartment of Pediatrics, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.
Brian B GrahamDepartment of Medicine, University of California, San Francisco, California.ORCID 0000-0001-7541-2585
Kurt R StenmarkDepartment of Pediatrics, University of Colorado, Anschutz Medical Campus, Aurora, Colorado.ORCID 0000-0001-6918-6411
University of Colorado Anschutz Medical Campus · USStanford University · USUniversity of California, San Francisco · US

Funding

VRAC and Rho in pulmonary EC proliferationP01HL014985 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI STENMARK, KURT R. · 1985 to 2019
$35.1M
Role of Complement-Driven Pulmonary Vascular Inflammation in PHP01HL152961 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI DELANEY, CASSIDY A · 2020 to 2024
$14.1M
Translational Pulmonary Vascular Biology ProgramT32HL007171 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI Sonia Castro Flores, Tim Lahm · 1985 to 2026
$9.4M
Investigating paclitaxel treatment in a pre-clinical model of Schistosoma-pulmonary hypertensionR01HL135872 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI Brian Barkley Graham · 2017 to 2026
$5.1M
PRIDE Academy: Impact of Ancestry and Gender to omics of lung diseasesR25HL146166 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI Matthew Wayne DeCamp, Sonia Castro Flores · 2019 to 2026
$3.4M
What triggers RV Fiber Re-Orientation in response to RV pressure overload, and what is its Consequence on Inter-Ventricular Decoupling?R01HL152250 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI Vitaly Kheyfets · 2023 to 2026
$1.9M
Inter-ventricular decoupling is an overlooked contributor to right ventricular myocardial stress and dysfunction in pediatric pulmonary hypertensionK25HL133481 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI KHEYFETS, VITALY · 2017 to 2021
$605k
Cause and effect of transient changes in stress, gene expression, and RV fiber orientation during RV remodeling, and its impact on RV function and inter-ventricular coupling in pulmonary hypertensionR56HL152250 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI KHEYFETS, VITALY · 2021 to 2021
$404k
NHLBI NIH HHS K25 HL133481NHLBI NIH HHS P01 HL014985NHLBI NIH HHS P01 HL152961NHLBI NIH HHS R01 HL135872NHLBI NIH HHS R01 HL152250NHLBI NIH HHS R25 HL146166NHLBI NIH HHS R56 HL152250NHLBI NIH HHS T32 HL007171
6 · The paper itself

Abstract

Few studies have examined lung interstitial macrophage (IM) molecular phenotypes after being exposed to hypoxia in vivo at the single-cell level, even though macrophages contribute to hypoxic pulmonary hypertension (PH). We aimed to determine IM diversity and its association with hypoxia-induced PH. We hypothesized that integrating single-cell RNA sequencing (scRNAseq) and binary hierarchal clustering (BHC) could resolve IM heterogeneity under normal homeostatic conditions and changes induced by hypoxia exposure.

Indexed as

Hypertension, PulmonaryHypoxiaAnimalsCluster AnalysisLungMacrophagesMiceSequence Analysis, RNAhypoxiamacrophagesPHsingle-cell RNAseq

Identifiers

PMID35608266
PMCPMC9273277
OpenAlexW4282947368

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.