Evidence map›Paper›PMID 35608199›Full record

ArticleClinical and translational medicine2022

Single-cell transcriptomics provides insights into the origin and microenvironment of human oesophageal high-grade intraepithelial neoplasia.

Guobin Liao, Nan Dai, Tiantian Xiong, Liang Wang, Xinwei Diao, Zhizhen Xu, Yuanli Ni, Dingrong Chen, Airui Jiang, Hui Lin and 2 more

Open access · goldAbstract read
In one paragraph

Article in Clinical and translational medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Improving outcomes in patients with oesophageal cancer.Nature reviews. Clinical oncology · 2023
    Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Guobin LiaoDepartment of Gastroenterology, the Second Affiliated Hospital, Army Medical University, Chongqing, China.
Nan DaiCancer Center, Daping Hospital, Army Medical University, Chongqing, China.
Tiantian XiongDepartment of Biochemistry and Molecular Biology, Army Medical University, Chongqing, China.
Liang WangDepartment of Gastroenterology, the Second Affiliated Hospital, Army Medical University, Chongqing, China.
Xinwei DiaoPathology, the Second Affiliated Hospital, Army Medical University, Chongqing, China.
Zhizhen XuDepartment of Biochemistry and Molecular Biology, Army Medical University, Chongqing, China.
Yuanli NiChongqing University Cancer Hospital, Chongqing, China.
Dingrong ChenDepartment of Gastroenterology, the Second Affiliated Hospital, Army Medical University, Chongqing, China.
Airui JiangDepartment of Gastroenterology, the Second Affiliated Hospital, Army Medical University, Chongqing, China.
Hui LinDepartment of Gastroenterology, the Second Affiliated Hospital, Army Medical University, Chongqing, China.
Shuangshuang DaiDepartment of Biochemistry and Molecular Biology, Army Medical University, Chongqing, China.
Jianying BaiDepartment of Gastroenterology, the Second Affiliated Hospital, Army Medical University, Chongqing, China.ORCID 0000-0002-8804-9188
Army Medical University · CNChongqing University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHigh-grade intraepithelial neoplasia (HIN) is the precursor of oesophageal squamous cell carcinoma. The molecular and functional properties of HIN are determined by intrinsic origin cells and the extrinsic microenvironment. Yet, these factors are poorly understood.

methodsWe performed single-cell RNA sequencing of cells from HINs and adjacent tissues from the human oesophagus. We analysed the heterogeneity of basal layer cells and confirmed it using immunostaining. Aneuploid cells in HIN were studied using primary cell culture combined with karyotype analysis. We reconstructed the lineage relationship between tumour and normal populations based on transcriptome similarity. Integration analysis was applied to our epithelial data and published invasive cancer data, and results were confirmed by immunostaining and 3D organoid functional experiments. We also analysed the tumour microenvironment of HIN.

resultsThe basal layer contained two cell populations: KRT15

conclusionsOur study provides a comprehensive single-cell transcriptome landscape of human oesophageal HIN. Our findings on the origin cells and unique microenvironment of HIN will allow for the development of strategies to block tumour progression and even prevent cancer initiation.

Indexed as

Carcinoma in SituEsophageal NeoplasmsEpitheliumHumansTranscriptomeTumor Microenvironmentheterogeneityhigh-grade intraepithelial neoplasiasingle-cell RNA sequencingtumour origin

Identifiers

PMID35608199
PMCPMC9128161
OpenAlexW4281389744

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.