Evidence map›Paper›PMID 35607442›Full record

ArticleDisease markers2022

The Overexpression of SLC25A13 Predicts Poor Prognosis and Is Correlated with Immune Cell Infiltration in Patients with Skin Cutaneous Melanoma.

Yue Lv, Chun-Hui Yuan, Lu-Yao Han, Gao-Ru Huang, Ling-Ce Ju, Ling-Hui Chen, Hai-Ying Han, Chong Zhang, Ling-Hui Zeng

Open access · hybridAbstract read
In one paragraph

Article in Disease markers, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

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  7. Calcium signaling in mitochondrial intermembrane space.Biochemical Society transactions · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yue LvDepartment of Nursing, School of Medicine, Zhejiang University City College, Hangzhou, Zhejiang, China 310015.ORCID https://orcid.org/0000-0003-0286-7284
Chun-Hui YuanDepartment of Pharmacology, School of Medicine, Zhejiang University City College, Hangzhou, Zhejiang, China 310015.ORCID https://orcid.org/0000-0002-0922-4209
Lu-Yao HanDepartment of Nursing, School of Medicine, Zhejiang University City College, Hangzhou, Zhejiang, China 310015.ORCID https://orcid.org/0000-0001-5188-0835
Gao-Ru HuangDepartment of Nursing, School of Medicine, Zhejiang University City College, Hangzhou, Zhejiang, China 310015.ORCID https://orcid.org/0000-0002-6245-0803
Ling-Ce JuDepartment of Nursing, School of Medicine, Zhejiang University City College, Hangzhou, Zhejiang, China 310015.ORCID https://orcid.org/0000-0002-3291-2181
Ling-Hui ChenThyroid Surgery Department, the First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China 310003.ORCID https://orcid.org/0000-0001-6228-9805
Hai-Ying HanDepartment of Nursing, School of Medicine, Zhejiang University City College, Hangzhou, Zhejiang, China 310015.ORCID https://orcid.org/0000-0002-6590-0718
Chong ZhangDepartment of Nursing, School of Medicine, Zhejiang University City College, Hangzhou, Zhejiang, China 310015.ORCID https://orcid.org/0000-0002-8113-5585
Ling-Hui ZengDepartment of Nursing, School of Medicine, Zhejiang University City College, Hangzhou, Zhejiang, China 310015.ORCID https://orcid.org/0000-0002-5924-4419
Zhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Skin cutaneous melanoma (SKCM) is one of the most malignant and aggressive cancers with poor prognosis due to its rapid progression towards metastasis. Thus, finding clinically relevant biomarkers for early diagnosis, prognosis, and therapy prediction is essential. This study focused on the identification of SLC25A13 as a novel biomarker for SKCM and is aimed at investigating the biological functions of solute carrier family 25 member 13 (SLC25A13) in the development of SKCM. Methods: GEPIA was used to analyze the diagnostic and prognostic values of SLC25A13 in SKCM using the TCGA dataset. PrognoScan was used to validate the prognostic value of SLC25A13 and its coexpressed genes in SKCM. TISIDB was established to reveal the relationship between the expression of SLC25A13 and immune infiltration in SKCM. The protein expression of SLC25A13 in SKCM was evaluated by the Human Protein Atlas. The signaling pathways and biological functions of SLC25A13 in SKCM were analyzed by LinkOmics. Metascape was applied to analyze the functional enrichment analysis of SLC25A13. Protein-protein interaction analysis of SLC25A13 was performed by GeneMANIA. Results: The mRNA and protein levels of SLC25A13 in the SKCM were much higher than those in the normal tissue. Furthermore, the overexpression of SLC25A13 predicts worse outcomes of SKCM patients. Moreover, the SLC25A13 expression was negatively correlated with the immune infiltration level of SKCM. The overexpression of SLC25A13 coexpressed genes, such as ACLY and AFG3L2, and SCL25A13 interacting genes also predicted the unfavorable prognosis of SKCM patients. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis of SLC25A13 coexpressed genes showed that these genes are enriched in ATPase activity, cell cycle, mTOR, and VEGFA-VEGFR2 signaling pathways, which were relevant to tumor development and angiogenesis. Gene set enrichment analysis (GSEA) demonstrated that the SLC25A13 expression was related to infiltrating immune cells in SKCM. Conclusion: Our findings revealed that SLC25A13 might be a potential prognostic and therapeutic biomarker for SKCM.

Indexed as

MelanomaSkin NeoplasmsATPases Associated with Diverse Cellular ActivitiesATP-Dependent ProteasesBiomarkers, TumorCutaneous Malignant MelanomaHumansMitochondrial Membrane Transport ProteinsPrognosisAFG3L2 protein, humanATPases Associated with Diverse Cellular ActivitiesATP-Dependent ProteasesBiomarkers, TumorMitochondrial Membrane Transport ProteinsSLC25A13 protein, human

Identifiers

PMID35607442
PMCPMC9124094
OpenAlexW4280546887

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.