Evidence map›Paper›PMID 35606784›Full record

ArticleGenome medicine2022

Rapid whole genome sequencing of critically ill pediatric patients from genetically underrepresented populations.

Nour Halabi, Sathishkumar Ramaswamy, Maha El Naofal, Alan Taylor, Sawsan Yaslam, Ruchi Jain, Roudha Alfalasi, Shruti Shenbagam, Martin Bitzan, Lemis Yavuz and 10 more

Open access · goldAbstract readCase ReportsLetter
In one paragraph

Article in Genome medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 2 institutions in 1 country.

Nour HalabiAl Jalila Genomics Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Sathishkumar RamaswamyAl Jalila Genomics Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Maha El NaofalAl Jalila Genomics Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Alan TaylorAl Jalila Genomics Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Sawsan YaslamAl Jalila Genomics Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Ruchi JainAl Jalila Genomics Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Roudha AlfalasiAl Jalila Genomics Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Shruti ShenbagamAl Jalila Genomics Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Martin BitzanKidney Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Lemis YavuzGeneral Pediatrics Department, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Hamda AbulhoulDepartment of Metabolic Medicine, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Shiva ShankarCritical Care Centre of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Dalwinder JanjuaCritical Care Centre of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Devendrasing JadhavCritical Care Centre of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Munira Mahmoud Al MaazmiCritical Care Centre of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Walid AbuhammourInfectious Diseases Department, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Alawi Alsheikh-AliCollege of Medicine, Mohammed Bin Rashid University of Medicine and Health Sciences, Dubai, United Arab Emirates.
Mohamed Al AwadhiAl Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Abdulla Al KhayatAl Jalila Children's Specialty Hospital, Dubai, United Arab Emirates.
Ahmad N Abou TayounAl Jalila Genomics Center of Excellence, Al Jalila Children's Specialty Hospital, Dubai, United Arab Emirates. Ahmad.Tayoun@ajch.ae.ORCID 0000-0002-9134-1673
Al Jalila Foundation · AEDubai Health Authority · AE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe a case series of five infants (age range: 1-90 days; 4 females and 1 male) who presented to Al Jalila Children's intensive care units (ICU) with complex multisystem disorders. Patients were Emirati, Kenyan, Jordanian, Filipino, or Pakistani. Trio rapid whole genome sequencing (rWGS) was performed on all five patients and their parents within the hospital's genomics facility. Results were returned within ~37 h from blood sample draws and were diagnostic in 3 out of 5 patients. Positive findings were a homozygous pathogenic variant in POMT1 gene causing muscular dystrophydystroglycanopathy, a mosaic tetrasomy of the short arm of chromosome 12 (12p13.33p11.1) causing Pallister-Killian syndrome, and compound heterozygous pathogenic variants in the LIPA gene causing lysosomal acid lipase deficiency and Wolman disease. The rWGS analysis provided fast and precise diagnostic findings in those 3 patients and also aided in devising better management plans for them in the intensive care setting. For example, the 3-month-old infant with pathogenic variants in the LIPA gene is now a candidate for an FDA-approved, potentially lifesaving enzyme replacement therapy (sebelipase alfa). Our case series emphasize the feasibility and utility of rWGS in pediatric intensive care setting, in a diverse population that has long been underserved in genomic services. Significant investments in local healthcare infrastructure are needed, globally, for more equitable access of genomic medicine among vulnerable patients.

Indexed as

Critical IllnessWhole Genome SequencingChromosome DisordersChromosomes, Human, Pair 12FemaleHumansInfantInfant, NewbornMaleWolman Disease

Identifiers

PMID35606784
PMCPMC9128109
OpenAlexW4281382719

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.