Evidence map›Paper›PMID 35606721›Full record

ArticleBMC genomics2022

Transcriptome analysis reveals fluid shear stress (FSS) and atherosclerosis pathway as a candidate molecular mechanism of short-term low salinity stress tolerance in abalone.

Grace Afumwaa Boamah, Zekun Huang, Yawei Shen, Yisha Lu, Zhixuan Wang, Ying Su, Changan Xu, Xuan Luo, Caihuan Ke, Weiwei You

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  4. Article
  5. Investigating the Mechanism of Low-Salinity Environmental Adaptation inAnimals : an open access journal from MDPI · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Grace Afumwaa BoamahState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, People's Republic of China.
Zekun HuangState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, People's Republic of China.
Yawei ShenState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, People's Republic of China.
Yisha LuState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, People's Republic of China.
Zhixuan WangState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, People's Republic of China.
Ying SuState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, People's Republic of China.
Changan XuThird Institute of Oceanography, MNR, Xiamen, 361005, China.
Xuan LuoState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, People's Republic of China.
Caihuan KeState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, People's Republic of China. chke@xmu.edu.cn.
Weiwei YouState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, People's Republic of China. wwyou@xmu.edu.cn.
Xiamen University · CNFujian Institute of Oceanography · CN

Funding

Chinese Government Marine Scholarship 2018SOA015946Fujian Provincial Science and Technology Project 2019N0001 and 2020NZ08003National Key Research and Development Program of China 2018YFD0901401National Natural Science Foundation of China 31872564
6 · The paper itself

Abstract

backgroundTranscriptome sequencing is an effective tool to reveal the essential genes and pathways underlying countless biotic and abiotic stress adaptation mechanisms. Although severely challenged by diverse environmental conditions, the Pacific abalone Haliotis discus hannai remains a high-value aquaculture mollusk and a Chinese predominantly cultured abalone species. Salinity is one of such environmental factors whose fluctuation could significantly affect the abalone's cellular and molecular immune responses and result in high mortality and reduced growth rate during prolonged exposure. Meanwhile, hybrids have shown superiority in tolerating diverse environmental stresses over their purebred counterparts and have gained admiration in the Chinese abalone aquaculture industry. The objective of this study was to investigate the molecular and cellular mechanisms of low salinity adaptation in abalone. Therefore, this study used transcriptome analysis of the gill tissues and flow cytometric analysis of hemolymph of H. discus hannai (DD) and interspecific hybrid H. discus hannai ♀ x H. fulgens ♂ (DF) during low salinity exposure. Also, the survival and growth rate of the species under various salinities were assessed.

resultsThe transcriptome data revealed that the differentially expressed genes (DEGs) were significantly enriched on the fluid shear stress and atherosclerosis (FSS) pathway. Meanwhile, the expression profiles of some essential genes involved in this pathway suggest that abalone significantly up-regulated calmodulin-4 (CaM-4) and heat-shock protein90 (HSP90), and significantly down-regulated tumor necrosis factor (TNF), bone morphogenetic protein-4 (BMP-4), and nuclear factor kappa B (NF-kB). Also, the hybrid DF showed significantly higher and sustained expression of CaM and HSP90, significantly higher phagocytosis, significantly lower hemocyte mortality, and significantly higher survival at low salinity, suggesting a more active molecular and hemocyte-mediated immune response and a more efficient capacity to tolerate low salinity than DD.

conclusionsOur study argues that the abalone CaM gene might be necessary to maintain ion equilibrium while HSP90 can offset the adverse changes caused by low salinity, thereby preventing damage to gill epithelial cells (ECs). The data reveal a potential molecular mechanism by which abalone responds to low salinity and confirms that hybridization could be a method for breeding more stress-resilient aquatic species.

Indexed as

AtherosclerosisGastropodaAnimalsGene Expression ProfilingSalinitySalt StressTranscriptomeAbaloneFSS pathwayImmunityInterspecific hybridLow salinityTranscriptomics

Identifiers

PMID35606721
PMCPMC9128277
OpenAlexW4281392526

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.