Evidence map›Paper›PMID 35604931›Full record

ArticlePLoS genetics2022

Early midcell localization of Escherichia coli PBP4 supports the function of peptidoglycan amidases.

Jolanda Verheul, Adam Lodge, Hamish C L Yau, Xiaolong Liu, Gabriela Boelter, Xinwei Liu, Alexandra S Solovyova, Athanasios Typas, Manuel Banzhaf, Waldemar Vollmer and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Jolanda VerheulBacterial Cell Biology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0001-6704-580X
Adam LodgeCentre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.
Hamish C L YauCentre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.ORCID 0000-0002-6066-4226
Xiaolong LiuBacterial Cell Biology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0002-3448-7406
Gabriela BoelterInstitute of Microbiology & Infection and School of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.ORCID 0000-0002-1812-8681
Xinwei LiuBacterial Cell Biology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0002-5576-1566
Alexandra S SolovyovaNUPPA, Leech Building, Framlington Place, Newcastle upon Tyne, United Kingdom.ORCID 0000-0002-5682-7037
Athanasios TypasEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.ORCID 0000-0002-0797-9018
Manuel BanzhafInstitute of Microbiology & Infection and School of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.ORCID 0000-0002-4682-1037
Waldemar VollmerCentre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.ORCID 0000-0003-0408-8567
Tanneke den BlaauwenBacterial Cell Biology, Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0002-5403-5597
Newcastle University · GBUniversity of Amsterdam · NLUniversity of Birmingham · GBUniversity of Oxford · GBEuropean Molecular Biology Laboratory · DE

Funding

Wellcome TrustWellcome Trust 101824/Z/13/Z
6 · The paper itself

Abstract

Insertion of new material into the Escherichia coli peptidoglycan (PG) sacculus between the cytoplasmic membrane and the outer membrane requires a well-organized balance between synthetic and hydrolytic activities to maintain cell shape and avoid lysis. Since most bacteria carry multiple enzymes carrying the same type of PG hydrolytic activity, we know little about the specific function of given enzymes. Here we show that the DD-carboxy/endopeptidase PBP4 localizes in a PBP1A/LpoA and FtsEX dependent fashion at midcell during septal PG synthesis. Midcell localization of PBP4 requires its non-catalytic domain 3 of unknown function, but not the activity of PBP4 or FtsE. Microscale thermophoresis with isolated proteins shows that PBP4 interacts with NlpI and the FtsEX-interacting protein EnvC, an activator of amidases AmiA and AmiB, which are needed to generate denuded glycan strands to recruit the initiator of septal PG synthesis, FtsN. The domain 3 of PBP4 is needed for the interaction with NlpI and EnvC, but not PBP1A or LpoA. In vivo crosslinking experiments confirm the interaction of PBP4 with PBP1A and LpoA. We propose that the interaction of PBP4 with EnvC, whilst not absolutely necessary for mid-cell recruitment of either protein, coordinates the activities of PBP4 and the amidases, which affects the formation of denuded glycan strands that attract FtsN. Consistent with this model, we found that the divisome assembly at midcell was premature in cells lacking PBP4, illustrating how the complexity of interactions affect the timing of cell division initiation.

Indexed as

Escherichia coliEscherichia coli ProteinsAmidohydrolasesATP-Binding Cassette TransportersCystic Fibrosis Transmembrane Conductance RegulatorEndopeptidasesLipoproteinsN-Acetylmuramoyl-L-alanine AmidasePeptidoglycanAmidohydrolasesATP-Binding Cassette TransportersCystic Fibrosis Transmembrane Conductance RegulatorEndopeptidasesEscherichia coli ProteinsFtsE protein, E coliLipoproteinsN-Acetylmuramoyl-L-alanine AmidaseNlpI protein, E coliPeptidoglycanpeptidoglycan endopeptidase

Identifiers

PMID35604931
PMCPMC9166362
OpenAlexW4281293277

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.