Evidence map›Paper›PMID 35604226›Full record

ArticleApplied and environmental microbiology2022

Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep.

Hang Yu, Daan R Speth, Stephanie A Connon, Danielle Goudeau, Rex R Malmstrom, Tanja Woyke, Victoria J Orphan

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Hang YuDivision of Geological and Planetary Sciences, California Institute of Technologygrid.20861.3d, Pasadena, California, USA.ORCID 0000-0002-7600-1582
Daan R SpethDivision of Geological and Planetary Sciences, California Institute of Technologygrid.20861.3d, Pasadena, California, USA.ORCID 0000-0002-2361-5935
Stephanie A ConnonDivision of Geological and Planetary Sciences, California Institute of Technologygrid.20861.3d, Pasadena, California, USA.
Danielle GoudeauDOE Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Rex R MalmstromDOE Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Tanja WoykeDOE Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.ORCID 0000-0002-9485-5637
Victoria J OrphanDivision of Geological and Planetary Sciences, California Institute of Technologygrid.20861.3d, Pasadena, California, USA.
California Institute of Technology · USLawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Syntrophic consortia of anaerobic methanotrophic archaea (ANME) and sulfate-reducing bacteria (SRB) consume large amounts of methane and serve as the foundational microorganisms in marine methane seeps. Despite their importance in the carbon cycle, research on the physiology of ANME-SRB consortia has been hampered by the slow growth and complex physicochemical environment the consortia inhabit. Here, we report successful sediment-free enrichment of ANME-SRB consortia from deep-sea methane seep sediments in the Santa Monica Basin, California. Anoxic Percoll density gradients and size-selective filtration were used to separate ANME-SRB consortia from sediment particles and single cells to accelerate the cultivation process. Over a 3-year period, a subset of the sediment-associated ANME and SRB lineages, predominantly comprised of ANME-2a/2b ("

Indexed as

EcosystemMethaneAnaerobiosisArchaeaBacteriaGeologic SedimentsOxidation-ReductionPhylogenySulfatesMethaneSulfatesanaerobic methanotrophic archaeaanaerobic oxidation of methaneANMEcultivationflow cytometrygenomicsinterspecies interaction

Identifiers

PMID35604226
PMCPMC9195934
OpenAlexW4281293833

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.