Evidence map›Paper›PMID 35604147›Full record

ArticleMicrobiology spectrum2022

Circular RNAs Represent a Novel Class of Human Cytomegalovirus Transcripts.

Shaomin Yang, Xiaolian Liu, Mei Wang, Di Cao, Dabbu Kumar Jaijyan, Nicole Enescu, Jian Liu, Songbin Wu, Sashuang Wang, Wuping Sun and 8 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Roles of circRNAs in viral pathogenesis.Frontiers in cellular and infection microbiology · 2025
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Identification and characterization of human cytomegalovirus-encoded circular RNAs.Frontiers in cellular and infection microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 2 countries.

Shaomin Yang *Jinan University, Guangzhou, Guangdong, China.ORCID 0000-0001-7932-4777
Xiaolian Liu *Jinan University, Guangzhou, Guangdong, China.
Mei Wang *Jinan University, Guangzhou, Guangdong, China.
Di Cao *Jinan University, Guangzhou, Guangdong, China.
Dabbu Kumar JaijyanDepartment of Microbiology and Molecular Genetics, New Jersey Medical School, Rutgers University, Newark, New Jersey, USA.
Nicole EnescuDepartment of Microbiology and Molecular Genetics, New Jersey Medical School, Rutgers University, Newark, New Jersey, USA.
Jian LiuSchool of Biological Sciences and Biotechnology, Minnan Normal University, Zhangzhou, Fujian, China.
Songbin WuDepartment of Pain Medicine and Shenzhen Municipal Key Laboratory for Pain Medicine, Shenzhen Nanshan People's Hospital, The 6th Affiliated Hospital of Shenzhen University Health Science Center, Shenzhen, Guangdong, China.
Sashuang WangDepartment of Pain Medicine and Shenzhen Municipal Key Laboratory for Pain Medicine, Shenzhen Nanshan People's Hospital, The 6th Affiliated Hospital of Shenzhen University Health Science Center, Shenzhen, Guangdong, China.
Wuping SunDepartment of Pain Medicine and Shenzhen Municipal Key Laboratory for Pain Medicine, Shenzhen Nanshan People's Hospital, The 6th Affiliated Hospital of Shenzhen University Health Science Center, Shenzhen, Guangdong, China.
Lizu XiaoDepartment of Pain Medicine and Shenzhen Municipal Key Laboratory for Pain Medicine, Shenzhen Nanshan People's Hospital, The 6th Affiliated Hospital of Shenzhen University Health Science Center, Shenzhen, Guangdong, China.
Alison GuDepartment of Microbiology and Molecular Genetics, New Jersey Medical School, Rutgers University, Newark, New Jersey, USA.
Yaolan LiJinan University, Guangzhou, Guangdong, China.
Hong ZhouDepartment of Microbiology, Howard Universitygrid.257127.4 College of Medicine, Washington, DC, USA.
Sanjay TyagiPublic Health Research Institute, New Jersey Medical School, Newark, New Jersey, USA.
Jianguo WuJinan University, Guangzhou, Guangdong, China.ORCID 0000-0002-8326-2895
Qiyi TangDepartment of Microbiology, Howard Universitygrid.257127.4 College of Medicine, Washington, DC, USA.ORCID 0000-0002-6487-2356
Hua ZhuDepartment of Microbiology and Molecular Genetics, New Jersey Medical School, Rutgers University, Newark, New Jersey, USA.
Jinan University · CNRutgers, The State University of New Jersey · USShenzhen University Health Science Center · CNHoward University · USZhangzhou Normal University · CN

Funding

Background free amplified single-molecule FISH for in situ and flow cytometric applicationsR01CA227291 · NCI · RBHS-NEW JERSEY MEDICAL SCHOOL · PI TYAGI, SANJAY · 2018 to 2022
$2.8M
NCI NIH HHS R01 CA227291
6 · The paper itself

Abstract

Human cytomegalovirus (HCMV) infects a large portion of the human population globally. Several HCMV-derived noncoding RNAs are involved in the regulation of viral gene expression and the virus life cycle. Here, we reported that circRNAs are a new class of HCMV transcripts. We bioinformatically predict 704 candidate circRNAs encoded by the TB40/E strain and 230 encoded by the HAN strain. We also systematically compare circRNA features, including the breakpoint sequence consensus, strand preference, length distribution, and exon numbers between host genome-encoded circRNAs and viral circRNAs, and showed that the unique characteristics of viral circRNAs are correlated with their genome types. Furthermore, we experimentally confirmed 324 back-splice junctions (BSJs) from three HCMV strains, Towne, TB40/E, and Toledo, and identified 4 representative HCMV circRNAs by RNase R treatment. Interestingly, we also showed that HCMV contains alternative back-splicing circRNAs. We developed a new amplified FISH method that allowed us to visualize circRNAs and quantify the number of circRNA molecules in the infected cells. The competitive endogenous RNA network analysis suggests that HCMV circRNAs play important roles in viral DNA synthesis via circRNA-miRNA-mRNA networks. Our findings highlight that circRNAs are an important component of the HCMV transcriptome that may contribute to viral replication and pathogenesis.

Indexed as

MicroRNAsRNA, CircularCytomegalovirusHumansRNA, MessengerTranscription, GeneticVirus ReplicationMicroRNAsRNA, CircularRNA, MessengercircRNAcytomegalovirusEBVHCMVKSHVRNA splice junction

Identifiers

PMID35604147
PMCPMC9241847
OpenAlexW4281392350

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.