Evidence map›Paper›PMID 35604123›Full record

ArticlemBio2022

Evolution of a

Siu Lung Ng, Sophia Kammann, Gabi Steinbach, Tobias Hoffmann, Peter J Yunker, Brian K Hammer

Abstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Comparative Analyses Suggest Genome Stability and Plasticity inInternational journal of molecular sciences · 2025
    Article
  4. Quorum sensing orchestrates parallel cell death pathways inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Quorum sensing orchestrates parallel cell death pathways inbioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Sporadic type VI secretion in seventh pandemicMicrobiology (Reading, England) · 2023
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Siu Lung NgSchool of Biological Sciences, Georgia Institute of Technologygrid.213917.f, Atlanta, Georgia, USA.ORCID 0000-0001-8944-9223
Sophia KammannSchool of Biological Sciences, Georgia Institute of Technologygrid.213917.f, Atlanta, Georgia, USA.
Gabi SteinbachSchool of Physics, Georgia Institute of Technologygrid.213917.f, Atlanta, Georgia, USA.ORCID 0000-0002-3751-9899
Tobias HoffmannSchool of Biological Sciences, Georgia Institute of Technologygrid.213917.f, Atlanta, Georgia, USA.
Peter J YunkerSchool of Physics, Georgia Institute of Technologygrid.213917.f, Atlanta, Georgia, USA.ORCID 0000-0001-8471-4171
Brian K HammerSchool of Biological Sciences, Georgia Institute of Technologygrid.213917.f, Atlanta, Georgia, USA.ORCID 0000-0002-3767-6034

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutations in regulatory mechanisms that control gene expression contribute to phenotypic diversity and thus facilitate the adaptation of microbes and other organisms to new niches. Comparative genomics can be used to infer rewiring of regulatory architecture based on large effect mutations like loss or acquisition of transcription factors but may be insufficient to identify small changes in noncoding, intergenic DNA sequence of regulatory elements that drive phenotypic divergence. In human-derived Vibrio cholerae, the response to distinct chemical cues triggers production of multiple transcription factors that can regulate the type VI secretion system (T6), a broadly distributed weapon for interbacterial competition. However, to date, the signaling network remains poorly understood because no regulatory element has been identified for the major T6 locus. Here we identify a conserved

Indexed as

Type VI Secretion SystemsVibrio choleraeBacterial ProteinsGene Expression Regulation, BacterialHumansPolymorphism, Single NucleotidePromoter Regions, GeneticTranscription FactorsBacterial ProteinsTranscription FactorsType VI Secretion Systemsevolutiongene regulationsecretion systemssignal transductiontranscription factorsvibrio cholerae

Identifiers

PMID35604123
PMCPMC9239110

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.