Evidence map›Paper›PMID 35602939›Full record

ArticleiScience2022

Chromatin remodeling is restricted by transient GATA6 binding during iPSC differentiation to definitive endoderm.

James A Heslop, Behshad Pournasr, Stephen A Duncan

Open access · goldAbstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

James A HeslopDepartment of Regenerative Medicine and Cell Biology, Medical University of South Carolina, USA.
Behshad PournasrDepartment of Regenerative Medicine and Cell Biology, Medical University of South Carolina, USA.
Stephen A DuncanDepartment of Regenerative Medicine and Cell Biology, Medical University of South Carolina, USA.
Medical University of South Carolina · US

Funding

Translational Science Laboratory Shared ResourceP30CA138313 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI RAYMOND N. DUBOIS · 2009 to 2026
$42.7M
The role of SMAD1 and SATB2 in colon patterningP20GM130457 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI STEPHEN A DUNCAN · 2020 to 2026
$18.7M
Proteomics CoreP30DK123704 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DON C. ROCKEY · 2020 to 2026
$8.8M
Molecular Basis of Human Hepatic Progenitor Cell FormationR01DK102716 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DUNCAN, STEPHEN A · 2014 to 2022
$3.8M
Study and Treatment of Mitochondrial DNA Depletion Syndrome 3 Using iPSCsR01DK119728 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DUNCAN, STEPHEN A · 2019 to 2022
$2.0M
NCI NIH HHS P30 CA138313NIDDK NIH HHS P30 DK123704NIDDK NIH HHS R01 DK102716NIDDK NIH HHS R01 DK119728NIGMS NIH HHS P20 GM130457
6 · The paper itself

Abstract

In addition to cooperatively driving transcriptional programs, emerging evidence supports transcription factors interacting with one another to modulate the outcome of binding events. As such, transcription factor interactions fine-tune the unique gene expression profiles required for developmental progression. Using human-induced pluripotent stem cells as a model of human endoderm lineage commitment, we reveal that GATA6 transiently co-localizes with EOMES at regions associated with non-endodermal lineages and is required for the repression of chromatin opening at these loci. Our results indicate that GATA6-dependent repression of chromatin remodeling, which is potentially mediated via the recruitment of NCOR1 to the EOMES interactome, contributes to definitive endoderm commitment. We anticipate that similar mechanisms are common during human development, furthering our understanding of the complex mechanisms that define cell fate decisions.

Indexed as

Developmental biologyMolecular biologyMolecular mechanism of gene regulation

Identifiers

PMID35602939
PMCPMC9118154
OpenAlexW4224542793

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.