Evidence map›Paper›PMID 35601915›Full record

ArticleiScience2022

Intrinsically disordered regions couple the ligand binding and kinase activation of Trk neurotrophin receptors.

Erik F Kot, María L Franco, Ekaterina V Vasilieva, Alexandra V Shabalkina, Alexander S Arseniev, Sergey A Goncharuk, Konstantin S Mineev, Marçal Vilar

Open access · goldAbstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Erik F KotMoscow Institute of Physics and Technology, 141707 Dolgoprudnyi, Russian Federation.
María L FrancoMolecular Basis of Neurodegeneration Unit, Institute of Biomedicine of València (IBV-CSIC), C/ Jaume Roig 11, 46010 València, Spain.
Ekaterina V VasilievaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russian Federation.
Alexandra V ShabalkinaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russian Federation.
Alexander S ArsenievShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russian Federation.
Sergey A GoncharukShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russian Federation.
Konstantin S MineevShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, 117997 Moscow, Russian Federation.
Marçal VilarMolecular Basis of Neurodegeneration Unit, Institute of Biomedicine of València (IBV-CSIC), C/ Jaume Roig 11, 46010 València, Spain.
Institute of Bioorganic Chemistry · RUInstituto de Biomedicina de Valencia · ESMoscow Institute of Physics and Technology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Receptor tyrosine kinases (RTKs) are key players in development and several diseases. Understanding the molecular mechanism of RTK activation by its ligand could lead to the design of new RTK inhibitors. How the extracellular domain is coupled to the intracellular kinase domain is a matter of debate. Ligand-induced dimerization and ligand-induced conformational change of pre-formed dimers are two of the most proposed models. Recently we proposed that TrkA, the RTK for nerve growth factor (NGF), is activated by rotation of the transmembrane domain (TMD) pre-formed dimers upon NGF binding. However, one of the unsolved issues is how the ligand binding is conformationally coupled to the TMD rotation if unstructured extracellular juxtamembrane (eJTM) regions separate them. Here we use nuclear magnetic resonance in bicelles and functional studies to demonstrate that eJTM regions from the Trk family are intrinsically disordered and couple the ligand-binding domains and TMDs possibly via the interaction with NGF.

Indexed as

Molecular biologyStructural biologyThree-dimensional reconstruction of biomoleculair structures

Identifiers

PMID35601915
PMCPMC9117555
OpenAlexW4225405217

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.