Evidence map›Paper›PMID 35601015›Full record

ArticlePlant biotechnology (Tokyo, Japan)2022

4-Phenylbutyric acid promotes plant regeneration as an auxin by being converted to phenylacetic acid via an IBR3-independent pathway.

Akira Iwase, Arika Takebayashi, Yuki Aoi, David S Favero, Shunsuke Watanabe, Mitsunori Seo, Hiroyuki Kasahara, Keiko Sugimoto

Open access · diamondAbstract read
In one paragraph

Article in Plant biotechnology (Tokyo, Japan), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Preface to the special issue "Stem cell reformation in plants".Plant biotechnology (Tokyo, Japan) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Akira IwaseRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Arika TakebayashiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Yuki AoiDepartment of Biological Production Science, United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
David S FaveroRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Shunsuke WatanabeRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Mitsunori SeoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Hiroyuki KasaharaRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Keiko SugimotoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
RIKEN Center for Sustainable Resource Science · JPTokyo University of Agriculture and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

4-Phenylbutyric acid (4PBA) is utilized as a drug to treat urea cycle disorders and is also being studied as a potential anticancer drug that acts via its histone deacetylase (HDAC) inhibitor activity. During a search to find small molecules that affect plant regeneration in Arabidopsis, we found that 4PBA treatment promotes this process by mimicking the effect of exogenous auxin. Specifically, plant tissue culture experiments revealed that a medium containing 4PBA enhances callus formation and subsequent shoot regeneration. Analyses with auxin-responsive or cytokinin-responsive marker lines demonstrated that 4PBA specifically enhances AUXIN RESPONSE FACTOR (ARF)-dependent auxin responses. Our western blot analyses showed that 4PBA treatment does not enhance histone acetylation in Arabidopsis, in contrast to butyric acid and trichostatin A, other chemicals often used as HDAC inhibitors, suggesting this mechanism of action does not explain the observed effect of 4PBA on regeneration. Finally, mass spectroscopic analysis and genetic approaches uncovered that 4PBA in Arabidopsis plants is converted to phenylacetic acid (PAA), a known natural auxin, in a manner independent of peroxisomal IBR3-related β-oxidation. This study demonstrates that 4PBA application promotes regeneration in explants via its auxin activity and has potential applications to not only plant tissue culture engineering but also research on the plant β-oxidation pathway.

Indexed as

auxinhistone acetylationplant tissue cultureregeneration

Identifiers

PMID35601015
PMCPMC9080989
OpenAlexW4213133951

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.