Evidence map›Paper›PMID 35600402›Full record

ArticleFrontiers in oncology2022

Multi-Omics Analysis of Glioblastoma and Glioblastoma Cell Line: Molecular Insights Into the Functional Role of GPR56 and TG2 in Mesenchymal Transition.

Raksha A Ganesh, Pranali Sonpatki, Divya Naik, Arivusudar Everad John, Gajanan Sathe, Akhila Lakshmikantha, Komal Prasad Chandrachari, Lea Bauer, Vera Knäuper, Daniel Aeschlimann and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. The GPCR Connection: Linking Alzheimer's Disease and Glioblastoma.Journal of cellular and molecular medicine · 2026
    Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Raksha A GaneshMazumdar Shaw Center for Translational Research, Narayana Health, Bangalore, India.
Pranali SonpatkiMazumdar Shaw Center for Translational Research, Narayana Health, Bangalore, India.
Divya NaikMazumdar Shaw Center for Translational Research, Narayana Health, Bangalore, India.
Arivusudar Everad JohnMazumdar Shaw Center for Translational Research, Narayana Health, Bangalore, India.
Gajanan SatheInstitute of Bioinformatics, International Tech Park, Bangalore, India.
Akhila LakshmikanthaMazumdar Shaw Medical Center, Narayana Health, Bangalore, India.
Komal Prasad ChandrachariMazumdar Shaw Medical Center, Narayana Health, Bangalore, India.
Lea BauerMatrix Biology and Tissue Repair Research Unit, School of Dentistry, College of Biomedical and Life Sciences, Cardiff University, Cardiff, United Kingdom.
Vera KnäuperMatrix Biology and Tissue Repair Research Unit, School of Dentistry, College of Biomedical and Life Sciences, Cardiff University, Cardiff, United Kingdom.
Daniel AeschlimannMatrix Biology and Tissue Repair Research Unit, School of Dentistry, College of Biomedical and Life Sciences, Cardiff University, Cardiff, United Kingdom.
Krishnan VenkatraamanCenter for Bio-Separation Technology, Vellore Institute of Technology, Vellore, India.
Nameeta ShahMazumdar Shaw Center for Translational Research, Narayana Health, Bangalore, India.
Ravi SirdeshmukhMazumdar Shaw Center for Translational Research, Narayana Health, Bangalore, India.
Narayana Health · INCardiff University · GBVellore Institute of Technology University · INInstitute of Bioinformatics · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

G protein-coupled receptor 56 (GPR56/ADGRG1) is an adhesion GPCR with an essential role in brain development and cancer. Elevated expression of GPR56 was observed in the clinical specimens of Glioblastoma (GBM), a highly invasive primary brain tumor. However, we found the expression to be variable across the specimens, presumably due to the intratumor heterogeneity of GBM. Therefore, we re-examined GPR56 expression in public domain spatial gene expression data and single-cell expression data for GBM, which revealed that GPR56 expression was high in cellular tumors, infiltrating tumor cells, and proliferating cells, low in microvascular proliferation and peri-necrotic areas of the tumor, especially in hypoxic mesenchymal-like cells. To gain a better understanding of the consequences of GPR56 downregulation in tumor cells and other molecular changes associated with it, we generated a sh-RNA-mediated GPR56 knockdown in the GBM cell line U373 and performed transcriptomics, proteomics, and phospho-proteomics analysis. Our analysis revealed enrichment of gene signatures, pathways, and phosphorylation of proteins potentially associated with mesenchymal (MES) transition in the tumor and concurrent increase in cell invasion and migration behavior of the GPR56 knockdown GBM cells. Interestingly, our analysis also showed elevated expression of Transglutaminase 2 (TG2) - a known interactor of GPR56, in the knockdown cells. The inverse expression of GPR56 and TG2 was also observed in intratumoral, spatial gene expression data for GBM and in GBM cell lines cultured

Indexed as

GBM - glioblastoma multiformeGPR56/ADGRG1mesenchymal transitionomics analysisTG2

Identifiers

PMID35600402
PMCPMC9119646
OpenAlexW4225397061

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.