Evidence map›Paper›PMID 35599265›Full record

ArticleJournal of molecular modeling2022

A computationally affordable approach for accurate prediction of the binding affinity of JAK2 inhibitors.

Nguyen Thi Mai, Ngo Thi Lan, Thien Y Vu, Nguyen Thanh Tung, Huong Thi Thu Phung

Abstract read
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In one paragraph

Article in Journal of molecular modeling, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Nguyen Thi MaiInstitute of Materials Science, Vietnam Academy of Science and Technology, Hanoi, Vietnam.
Ngo Thi LanGraduate University of Science and Technology, Vietnam Academy of Science and Technology, Hanoi, Vietnam.
Thien Y VuFaculty of Pharmacy, Ton Duc Thang University, Ho Chi Minh City, Vietnam.
Nguyen Thanh TungInstitute of Materials Science, Vietnam Academy of Science and Technology, Hanoi, Vietnam. tungnt@ims.vast.ac.vn.
Huong Thi Thu PhungNTT Hi-Tech Institute, Nguyen Tat Thanh University, Ho Chi Minh City, Vietnam. ptthuong@ntt.edu.vn.ORCID http://orcid.org/0000-0001-5702-4597
Vietnam Academy of Science and Technology · VNThai Nguyen University · VNTon Duc Thang University · VNTrường ĐH Nguyễn Tất Thành · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Janus kinase 2 (JAK2) inhibitors are potential anticancer drugs in the treatment of lymphoma, leukemia, thrombocytosis and particularly myeloproliferative diseases. However, the resemblance among JAK family members has challenged the identification of highly selective inhibitors for JAK2 to reduce undesired side effects. As a result, a robust search for promising JAK2 inhibitors using a computational approach that can effectively nominate new potential candidates to be further analyzed through laborious experimental operations has become necessary. In this study, the binding affinities of JAK2 inhibitors were rapidly and precisely estimated using the fast pulling of ligand (FPL) simulations combined with a modified linear interaction energy (LIE) method. The approach correlates with the experimental binding affinities of JAK2 inhibitors with a correlation coefficient of R = 0.82 and a root-mean-square error of 0.67 kcal•mol

Indexed as

Antineoplastic AgentsJanus Kinase InhibitorsJanus Kinase 2Janus KinasesLigandsProtein Kinase InhibitorsAntineoplastic AgentsJanus Kinase 2Janus Kinase InhibitorsJanus KinasesLigandsProtein Kinase InhibitorsFast pulling of ligandJAK2 inhibitorLinear interaction energyMolecular dynamicsRelative binding affinity

Identifiers

PMID35599265
OpenAlexW4281287926

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.