Evidence map›Paper›PMID 35598378›Full record

ArticleRedox biology2022

An increase in surface hydrophobicity mediates chaperone activity in N-chlorinated RidA.

Marharyta Varatnitskaya, Julia Fasel, Alexandra Müller, Natalie Lupilov, Yunlong Shi, Kristin Fuchs, Marco Krewing, Christoph Jung, Timo Jacob, Barbara Sitek and 4 more

Open access · goldAbstract read
In one paragraph

Article in Redox biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Marharyta VaratnitskayaRuhr University Bochum, Institute of Biochemistry and Pathobiochemistry, Microbial Biochemistry, Bochum, Germany.
Julia FaselRuhr University Bochum, Institute of Biochemistry and Pathobiochemistry, Microbial Biochemistry, Bochum, Germany.
Alexandra MüllerRuhr University Bochum, Institute of Biochemistry and Pathobiochemistry, Microbial Biochemistry, Bochum, Germany.
Natalie LupilovRuhr University Bochum, Institute of Biochemistry and Pathobiochemistry, Microbial Biochemistry, Bochum, Germany.
Yunlong ShiUF Scripps Biomedical Research, Department of Chemistry, 130 Scripps Way, Jupiter, FL, 33458, USA.
Kristin FuchsRuhr University Bochum, Medical Proteome Center, Bochum, Germany; Klinik für Anästhesiologie, Intensivmedizin und Schmerztherapie, Universitätsklinikum Knappschaftskrankenhaus Bochum, Bochum, Germany.
Marco KrewingRuhr University Bochum, Applied Microbiology, Faculty of Biology and Biotechnology, Bochum, Germany.
Christoph JungHelmholtz Institute Ulm - Electrochemical Energy Storage, Basics of Electrochemistry, Ulm, Germany; Karlsruhe Institute of Technology (KIT), P.O. Box 3640, 76021, Karlsruhe, Germany.
Timo JacobHelmholtz Institute Ulm - Electrochemical Energy Storage, Basics of Electrochemistry, Ulm, Germany; Karlsruhe Institute of Technology (KIT), P.O. Box 3640, 76021, Karlsruhe, Germany; Institute of Electrochemistry, Ulm University, Albert-Einstein-Allee 47, D-89081, Ulm, Germany.
Barbara SitekRuhr University Bochum, Medical Proteome Center, Bochum, Germany; Klinik für Anästhesiologie, Intensivmedizin und Schmerztherapie, Universitätsklinikum Knappschaftskrankenhaus Bochum, Bochum, Germany.
Julia E BandowRuhr University Bochum, Applied Microbiology, Faculty of Biology and Biotechnology, Bochum, Germany.
Kate S CarrollUF Scripps Biomedical Research, Department of Chemistry, 130 Scripps Way, Jupiter, FL, 33458, USA.
Eckhard HofmannRuhr University Bochum, Protein Crystallography, Bochum, Germany.
Lars I LeichertRuhr University Bochum, Institute of Biochemistry and Pathobiochemistry, Microbial Biochemistry, Bochum, Germany. Electronic address: lars.leichert@ruhr-uni-bochum.de.
Ruhr University Bochum · DEKarlsruhe Institute of Technology · DEScripps Research Institute · USUniversitätsklinikum Knappschaftskrankenhaus Bochum · DE

Funding

Sulfur Metabolism in Human PathogensR01GM087638 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARROLL, KATE SUZANNE · 2009 to 2025
$5.0M
Probing the role of cysteine sulfenylation in cell signalingR01GM102187 · NIGMS · UNIVERSITY OF FLORIDA · PI Kate Suzanne Carroll · 2012 to 2026
$4.6M
Redox Modification and Targeting of Mutant KRas in CancerR01CA227849 · NCI · UNIVERSITY OF FLORIDA · PI CARROLL, KATE SUZANNE · 2018 to 2021
$1.7M
NCI NIH HHS R01 CA227849NIGMS NIH HHS R01 GM087638NIGMS NIH HHS R01 GM102187
6 · The paper itself

Abstract

Under physiological conditions, Escherichia coli RidA is an enamine/imine deaminase, which promotes the release of ammonia from reactive enamine/imine intermediates. However, when modified by hypochlorous acid (HOCl), it turns into a potent chaperone-like holdase that can effectively protect E. coli's proteome during oxidative stress. However, it is unknown, which residues need to be chlorinated for activation. Here, we employ a combination of LC-MS/MS analysis, a chemo-proteomic approach, and a mutagenesis study to identify residues responsible for RidA's chaperone-like function. Through LC-MS/MS of digested RidA

Indexed as

Escherichia coliEscherichia coli ProteinsMolecular ChaperonesAnimalsArginineChromatography, LiquidHalogenationHydrophobic and Hydrophilic InteractionsHypochlorous AcidIminesLysineProteomicsTandem Mass SpectrometryArginineEscherichia coli ProteinsHypochlorous AcidIminesLysineMolecular ChaperonesChaperoneE. coliN-ChlorinationOxidationOxidative stress

Identifiers

PMID35598378
PMCPMC9126958
OpenAlexW4229075221

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.