Evidence map›Paper›PMID 35597793›Full record

ArticleCell death & disease2022

PHF13 epigenetically activates TGFβ driven epithelial to mesenchymal transition.

Yating Sun, Dan Li, Hongmei Liu, Yongye Huang, Fanyu Meng, Jiahao Tang, Zhanjun Li, Wanhua Xie

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Yating Sun *The Precise Medicine Center, Department of Basic Medical College, Shenyang Medical College, Shenyang, 110034, China.
Dan Li *The Precise Medicine Center, Department of Basic Medical College, Shenyang Medical College, Shenyang, 110034, China.
Hongmei Liu *CAS Key Laboratory of Regenerative Biology, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, 510530, China.
Yongye HuangCollege of Life and Health Sciences, Northeastern University, Shenyang, 110169, China.
Fanyu MengThe Precise Medicine Center, Department of Basic Medical College, Shenyang Medical College, Shenyang, 110034, China.
Jiahao TangThe Precise Medicine Center, Department of Basic Medical College, Shenyang Medical College, Shenyang, 110034, China.
Zhanjun LiKey Laboratory of Zoonosis Research, Ministry of Education, College of Animal Science, Jilin University, Changchun, 130062, China. lizj_1998@jlu.edu.cn.ORCID 0000-0001-6914-8589
Wanhua XieThe Precise Medicine Center, Department of Basic Medical College, Shenyang Medical College, Shenyang, 110034, China. wanhuaxie@icloud.com.ORCID 0000-0002-9080-244X
Shenyang Medical College · CNChinese Academy of Sciences · CNJilin University · CNNortheastern University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic alteration is a pivotal factor in tumor metastasis. PHD finger protein 13 (PHF13) is a recently identified epigenetic reader of H3K4me2/3 that functions as a transcriptional co-regulator. In this study, we demonstrate that PHF13 is required for pancreatic-cancer-cell growth and metastasis. Integrative analysis of transcriptome and epigenetic profiles provide further mechanistic insights into the epigenetic regulation of genes associated with cell metastasis during the epithelial-to-mesenchymal transition (EMT) induced by transforming growth factor β (TGFβ). Our data suggest PHF13 depletion impairs activation of TGFβ stimulated genes and correlates with a loss of active epigenetic marks (H3K4me3 and H3K27ac) at these genomic regions. These observations argue for a dependency of TGFβ target activation on PHF13. Furthermore, PHF13-dependent chromatin regions are enriched in broad H3K4me3 domains and super-enhancers, which control genes critical to cancer-cell migration and invasion, such as SNAI1 and SOX9. Overall, our data indicate a functional and mechanistic correlation between PHF13 and EMT.

Indexed as

DNA-Binding ProteinsEpigenesis, GeneticEpithelial-Mesenchymal TransitionNeoplasmsTranscription FactorsCell Line, TumorChromatinEpithelial CellsHumansTransforming Growth Factor betaChromatinDNA-Binding ProteinsPHF13 protein, humanTranscription FactorsTransforming Growth Factor beta

Identifiers

PMID35597793
PMCPMC9124206
OpenAlexW4281263551

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.