Evidence map›Paper›PMID 35596719›Full record

ArticleThe New phytologist2022

Differential timing of gene expression and recruitment in independent origins of CAM in the Agavoideae (Asparagaceae).

Karolina Heyduk, Edward V McAssey, Jim Leebens-Mack

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 37 citations in OpenAlex.

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  10. The CAM lineages of planet Earth.Annals of botany · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Karolina HeydukSchool of Life Sciences, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA.ORCID 0000-0002-1429-6397
Edward V McAsseySchool of Life Sciences, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA.ORCID 0000-0003-1568-3361
Jim Leebens-MackDepartment of Plant Biology, University of Georgia, Athens, GA, 30602, USA.ORCID 0000-0003-4811-2231
University of Hawaiʻi at Mānoa · USUniversity of Georgia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crassulacean acid metabolism (CAM) photosynthesis has evolved repeatedly across the plant tree of life, however our understanding of the genetic convergence across independent origins remains hampered by the lack of comparative studies. Here, we explore gene expression profiles in eight species from the Agavoideae (Asparagaceae) encompassing three independent origins of CAM. Using comparative physiology and transcriptomics, we examined the variable modes of CAM in this subfamily and the changes in gene expression across time of day and between well watered and drought-stressed treatments. We further assessed gene expression and the molecular evolution of genes encoding phosphoenolpyruvate carboxylase (PPC), an enzyme required for primary carbon fixation in CAM. Most time-of-day expression profiles are largely conserved across all eight species and suggest that large perturbations to the central clock are not required for CAM evolution. By contrast, transcriptional response to drought is highly lineage specific. Yucca and Beschorneria have CAM-like expression of PPC2, a copy of PPC that has never been shown to be recruited for CAM in angiosperms. Together the physiological and transcriptomic comparison of closely related C

Indexed as

AsparagaceaeCrassulacean Acid MetabolismPhosphoenolpyruvate CarboxylasePhotosynthesisTranscriptomePhosphoenolpyruvate CarboxylaseAgavoideaecarboxylationcomparative transcriptomicsCrassulacean acid metabolism photosynthesisYucca

Identifiers

PMID35596719
PMCPMC9796715
OpenAlexW4281252538

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.