ArticleRice (New York, N.Y.)2022
BSA-Seq and Fine Linkage Mapping for the Identification of a Novel Locus (qPH9) for Mature Plant Height in Rice (Oryza sativa).
Article in Rice (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed, 21 citations in OpenAlex.
- BSA-seq and fine linkage mapping for the identification of a novel locus (qNUE6) for nitrogen use efficiency in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Advances in mutant characterization for detecting causal mutations in crop plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Identifying Candidate Genes for Cotton Fruit Branch Length Using BSA-Seq and RNA-Seq.Plants (Basel, Switzerland) · 2026Article
- Genetic dissection of cotton fiber quality and yield components using an interspecific introgression population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Prediction of Rice Plant Height Using Linear Regression Model by Pyramiding Plant Height-Related Alleles.International journal of molecular sciences · 2025Article
- Pangenome analysis reveals yield- and fiber-related diversity and interspecific gene flow in Gossypium barbadense L.Nature communications · 2025Article
- Genomics assisted mapping of earliness in pea (Pisum sativum L.).Molecular biology reports · 2025Article
- Genetic Analysis and Fine Mapping of Spontaneously Mutated Male Sterility Gene in Chinese Cabbage (Plants (Basel, Switzerland) · 2025Article
- Identification of Dwarfing Candidate Genes inPlants (Basel, Switzerland) · 2024Article
- Identification and functional marker development of SbPLSH1 conferring purple leaf sheath in sorghum.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Fine Mapping of Five Grain Size QTLs Which Affect Grain Yield and Quality in Rice.International journal of molecular sciences · 2024Article
- Aspartyl proteases identified as candidate genes of a fiber length QTL, qFLTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Identification of two major QTLs for pod shell thickness in peanut (Arachis hypogaea L.) using BSA-seq analysis.BMC genomics · 2024Article
- Article
- Quantitative Trait Loci Mapping Identified Candidate Genes Involved in Plant Height Regulation in Rice.International journal of molecular sciences · 2023Article
- BSA-Seq for the Identification of Major Genes for EPN in Rice.International journal of molecular sciences · 2023Article
- Identification and characterization analysis of candidate genes controlling mushroom leaf development in Chinese kale by BSA-seq.Molecular breeding : new strategies in plant improvement · 2023Article
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8 authors at 1 institution in 2 countries.
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Abstract
backgroundPlant height is a key factor in the determination of rice yield since excessive height can easily cause lodging and reduce yield. Therefore, the identification and analysis of plant height-related genes to elucidate their physiological, biochemical, and molecular mechanisms have significant implications for rice breeding and production.
resultsHigh-throughput quantitative trait locus (QTL) sequencing analysis of a 638-individual F2:3 mapping population resulted in the identification of a novel height-related QTL (qPH9), which was mapped to a 2.02-Mb region of Chromosome 9. Local QTL mapping, which was conducted using 13 single nucleotide polymorphism (SNP)-based Kompetitive allele-specific PCR (KASP) markers for the qPH9 region, and traditional linkage analysis, facilitated the localization of qPH9 to a 126-kb region that contained 15 genes. Subsequent haplotype and sequence analyses indicated that OsPH9 was the most probable candidate gene for plant height at this locus, and functional analysis of osph9 CRISPR/Cas9-generated OsPH9 knockout mutants supported this conclusion.
conclusionOsPH9 was identified as a novel regulatory gene associated with plant height in rice, along with a height-reducing allele in 'Dongfu-114' rice, thereby representing an important molecular target for rice improvement. The findings of the present study are expected to spur the investigation of genetic mechanisms underlying rice plant height and further the improvement of rice plant height through marker-assisted selection.
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