Evidence map›Paper›PMID 35594398›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

MERS-CoV endoribonuclease and accessory proteins jointly evade host innate immunity during infection of lung and nasal epithelial cells.

Courtney E Comar, Clayton J Otter, Jessica Pfannenstiel, Ethan Doerger, David M Renner, Li Hui Tan, Stanley Perlman, Noam A Cohen, Anthony R Fehr, Susan R Weiss

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. SARS-CoV-2 and MERS-CoV disrupt host protein synthesis via nsp1 with differential effects on the integrated stress response.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Clade C MERS-CoV camel strains vary in protease utilization during viral entry.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. SARS-CoV-2 nsp15 enhances viral virulence by subverting host antiviral defenses.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Human coronaviruses: activation and antagonism of innate immune responses.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  18. Variable DPP4 expression in multiciliated cells of the human nasal epithelium as a determinant for MERS-CoV tropism.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  19. Coronavirus endoribonuclease antagonizes ZBP1-mediated necroptosis and delays multiple cell death pathways.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Courtney E ComarDepartment of Microbiology, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-0110-7128
Clayton J OtterDepartment of Microbiology, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-1609-8105
Jessica PfannenstielDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045.
Ethan DoergerDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045.
David M RennerDepartment of Microbiology, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-0548-3876
Li Hui TanOtorhinolaryngology-Head and Neck Surgery, University of Pennsylvania, Philadelphia, PA 19104.
Stanley PerlmanDepartment of Microbiology and Immunology, University of Iowa, Iowa City, IA 52242.ORCID 0000-0003-4213-2354
Noam A CohenOtorhinolaryngology-Head and Neck Surgery, University of Pennsylvania, Philadelphia, PA 19104.
Anthony R FehrDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS 66045.ORCID 0000-0003-1560-1573
Susan R WeissDepartment of Microbiology, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-8155-4528
University of Pennsylvania · USUniversity of Iowa · USUniversity of Kansas · USPhiladelphia VA Medical Center · US

Funding

Synthetic Chemical Biology CoreP20GM113117 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI OROZCO, ROBIN C. · 2016 to 2025
$23.9M
SARS-CoV Proteins in Heterologous Viral InfectionP01AI060699 · NIAID · UNIVERSITY OF IOWA · PI PERLMAN, STANLEY · 2004 to 2021
$21.5M
MERS coronavirus: antagonism of double-stranded RNA induced host response by accessory proteinsR01AI140442 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Susan R Weiss · 2018 to 2026
$5.1M
Role of eicosanoids in pathogenic human CoV infectionsR01AI129269 · NIAID · UNIVERSITY OF IOWA · PI Stanley Perlman · 2016 to 2026
$4.7M
Training in Emerging Infectious DiseasesT32AI055400 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI CHERRY, SARA, HENSLEY, SCOTT ERIC · 2003 to 2022
$4.4M
TRAINING IN NEUROVIROLOGY AND NEUROIMMUNOLOGYT32NS007180 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI WEISS, SUSAN R · 1985 to 2018
$2.8M
Determining mechanisms of innate immune modulation by ADP-ribosylationR35GM138029 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI Anthony R Fehr · 2020 to 2026
$2.7M
Investigating How ADP-ribosylation Impacts Innate Immunity During Coronavirus InfectionK22AI134993 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI FEHR, ANTHONY R · 2019 to 2020
$270k
COVID-19: Elucidating the Role of the NasalEpithelium in SARS-CoV-2 Infection, Transmission, and PreventionI01BX005432 · VA · PHILADELPHIA VA MEDICAL CENTER · PI COHEN, NOAM A · 2021 to 2023
–
BLRD VA I01 BX005432NIAID NIH HHS K22 AI134993NIAID NIH HHS P01 AI060699NIAID NIH HHS R01 AI129269NIAID NIH HHS R01 AI140442NIAID NIH HHS T32 AI055400NIGMS NIH HHS P20 GM113117NIGMS NIH HHS R35 GM138029NINDS NIH HHS T32 NS007180
6 · The paper itself

Abstract

Middle East respiratory syndrome coronavirus (MERS-CoV) emerged into humans in 2012, causing highly lethal respiratory disease. The severity of disease may be, in part, because MERS-CoV is adept at antagonizing early innate immune pathways—interferon (IFN) production and signaling, protein kinase R (PKR), and oligoadenylate synthetase/ribonuclease L (OAS/RNase L)—activated in response to viral double-stranded RNA (dsRNA) generated during genome replication. This is in contrast to severe acute respiratory syndrome CoV-2 (SARS-CoV-2), which we recently reported to activate PKR and RNase L and, to some extent, IFN signaling. We previously found that MERS-CoV accessory proteins NS4a (dsRNA binding protein) and NS4b (phosphodiesterase) could weakly suppress these pathways, but ablation of each had minimal effect on virus replication. Here we investigated the antagonist effects of the conserved coronavirus endoribonuclease (EndoU), in combination with NS4a or NS4b. Inactivation of EndoU catalytic activity alone in a recombinant MERS-CoV caused little if any effect on activation of the innate immune pathways during infection. However, infection with recombinant viruses containing combined mutations with inactivation of EndoU and deletion of NS4a or inactivation of the NS4b phosphodiesterase promoted robust activation of dsRNA-induced innate immune pathways. This resulted in at least tenfold attenuation of replication in human lung–derived A549 and primary nasal cells. Furthermore, replication of these recombinant viruses could be rescued to the level of wild-type MERS-CoV by knockout of host immune mediators MAVS, PKR, or RNase L. Thus, EndoU and accessory proteins NS4a and NS4b together suppress dsRNA-induced innate immunity during MERS-CoV infection in order to optimize viral replication.

Indexed as

COVID-19Middle East Respiratory Syndrome CoronavirusEndoribonucleasesEpithelial CellsHumansImmunity, InnateLungNasal MucosaSARS-CoV-2Uridylate-Specific EndoribonucleasesEndoribonucleasesUridylate-Specific Endoribonucleasesendonuclease Uinnate immune antagonismMERS-CoVPKRRNase L

Identifiers

PMID35594398
PMCPMC9173776
OpenAlexW4280521111

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.