Evidence map›Paper›PMID 35594298›Full record

ArticlePLoS genetics2022

Crosstalk between guanosine nucleotides regulates cellular heterogeneity in protein synthesis during nutrient limitation.

Simon Diez, Molly Hydorn, Abigail Whalen, Jonathan Dworkin

Abstract read
In one paragraph

Article in PLoS genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Microbial life in slow and stopped lanes.Trends in microbiology · 2024
    Review
  6. Review
  7. Review
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Simon DiezDepartment of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.
Molly HydornDepartment of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.ORCID 0000-0002-3881-0821
Abigail WhalenDepartment of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.ORCID 0000-0002-1370-5697
Jonathan DworkinDepartment of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, New York, United States of America.ORCID 0000-0002-8205-6918

Funding

Regulation of quiescence in bacteriaR35GM141953 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Jonathan Dworkin · 2021 to 2026
$2.5M
Columbia University Graduate Training Program in Microbiology and ImmunologyT32AI106711 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Nicholas Arpaia, Uttiya Basu · 2014 to 2026
$2.1M
Role of the alarmone (p)ppGpp in phenotypic antibiotic toleranceR21AI156397 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DWORKIN, JONATHAN · 2021 to 2022
$446k
NIAID NIH HHS R21 AI156397NIAID NIH HHS T32 AI106711NIGMS NIH HHS R35 GM141953
6 · The paper itself

Abstract

Phenotypic heterogeneity of microbial populations can facilitate survival in dynamic environments by generating sub-populations of cells that may have differential fitness in a future environment. Bacillus subtilis cultures experiencing nutrient limitation contain distinct sub-populations of cells exhibiting either comparatively high or low protein synthesis activity. This heterogeneity requires the production of phosphorylated guanosine nucleotides (pp)pGpp by three synthases: SasA, SasB, and RelA. Here we show that these enzymes differentially affect this bimodality: RelA and SasB are necessary to generate the sub-population of cells exhibiting low protein synthesis whereas SasA is necessary to generate cells exhibiting comparatively higher protein synthesis. Previously, it was reported that a RelA product allosterically activates SasB and we find that a SasA product competitively inhibits this activation. Finally, we provide in vivo evidence that this antagonistic interaction mediates the observed heterogeneity in protein synthesis. This work therefore identifies the mechanism underlying phenotypic heterogeneity in protein synthesis.

Indexed as

Gene Expression Regulation, BacterialNucleotidesBacillus subtilisGuanosineNutrientsGuanosineNucleotidesNutrients

Identifiers

PMID35594298
PMCPMC9173625

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.