ArticlePloS one2022
MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction.
Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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Who cites it
3 citing papers in PubMed.
- Autocycler: long-read consensus assembly for bacterial genomes.Bioinformatics (Oxford, England) · 2025Article
- Assembly of continuous high-resolution draft genome sequence of Hemicentrotus pulcherrimus using long-read sequencing.Development, growth & differentiation · 2024Article
- NanoCoV19: An analytical pipeline for rapid detection of severe acute respiratory syndrome coronavirus 2.Frontiers in genetics · 2022Article
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Abstract
Nanopore sequencing produces long reads and offers unique advantages over next-generation sequencing, especially for the assembly of draft bacterial genomes with improved completeness. However, assembly errors can occur due to data characteristics and assembly algorithms. To address these issues, we developed MAECI, a pipeline for generating consensus sequences from multiple assemblies of the same nanopore sequencing data and error correction. Systematic evaluation showed that MAECI is an efficient and effective pipeline to improve the accuracy and completeness of bacterial genome assemblies. The available codes and implementation are at https://github.com/langjidong/MAECI.
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