Evidence map›Paper›PMID 35591856›Full record

ArticleFrontiers in genetics2022

Single Nucleotide Polymorphism Effects on Lamb Fecal Egg Count Estimated Breeding Values in Progeny-Tested Katahdin Sires.

David R Notter, Marzieh Heidaritabar, Joan M Burke, Masoud Shirali, Brenda M Murdoch, James L M Morgan, Gota Morota, Tad S Sonstegard, Gabrielle M Becker, Gordon L Spangler and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 4 countries.

David R NotterDepartment of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA, United States.
Marzieh HeidaritabarLivestock Gentec, Department of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, AB, Canada.
Joan M BurkeUnited States Department of Agriculture, Agricultural Research Service, Dale Bumpers Small Farms Research Center, Booneville, AR, United States.
Masoud ShiraliAgri-Food and Biosciences Institute, Belfast, United Kingdom.
Brenda M MurdochDepartment of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, United States.
James L M MorganKatahdin Hair Sheep International, Fayetteville, AR, United States.
Gota MorotaDepartment of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA, United States.
Tad S SonstegardAcceligen, Eagan, MN, United States.
Gabrielle M BeckerDepartment of Animal, Veterinary and Food Sciences, University of Idaho, Moscow, ID, United States.
Gordon L SpanglerAnimal Genomics and Improvement Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD, United States.
Michael D MacNeilDelta G, Miles City, MT, United States.
James E MillerDepartment of Pathobiological Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, LA, United States.
University of Idaho · USVirginia Tech · USAgricultural Research Service · USLouisiana State University · USQueen's University Belfast · GBUnited States Department of Agriculture · USUniversity of Alberta · CAUniversity of the Free State · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Estimated breeding values (EBV) for fecal egg counts (FEC) at 42-90 days of age (WFEC) and 91-150 days of age (PFEC) for 84 progeny-tested Katahdin sires were used to identify associations of deregressed EBV with single-nucleotide polymorphisms (SNP) using 388,000 SNP with minor-allele frequencies ≥0.10 on an Illumina high-density ovine array. Associations between markers and FEC EBV were initially quantified by single-SNP linear regression. Effects of linkage disequilibrium (LD) were minimized by assigning SNP to 2,535 consecutive 1-Mb bins and focusing on the effect of the most significant SNP in each bin. Bonferroni correction was used to define bin-based (BB) genome- and chromosome-wide significance. Six bins on chromosome 5 achieved BB genome-wide significance for PFEC EBV, and three of those SNP achieved chromosome-wide significance after Bonferroni correction based on the 14,530 total SNP on chromosome 5. These bins were nested within 12 consecutive bins between 59 and 71 Mb on chromosome 5 that reached BB chromosome-wide significance. The largest SNP effects were at 63, 67, and 70 Mb, with LD among these SNP of

Indexed as

fecal egg countsgastrointestinal parasitesgenome-wide associationparasite resistanceregional heritability mappingsheep

Identifiers

PMID35591856
PMCPMC9110833
OpenAlexW4225415073

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.