Evidence map›Paper›PMID 35590345›Full record

ArticleGlobal health research and policy2022

Experience on the first national anti-TB drug resistance survey (DRS) in Timor-Leste.

Constantino Lopes, Debashish Kundu, Ismael Da Costa Barreto, Bernardino da Cruz, S Siva Kumar, Sureshbabu Ramalingam, Anna S Dean, Vineet Bhatia, Prabhu Seenivasan, C Padmapriyadarsini and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Global health research and policy, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genes · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Constantino LopesNational TB Programme, Ministry of Health, Dili, Timor-Leste.
Debashish KunduWorld Health Organization Country Office for Timor-Leste, Dili, Timor-Leste. debashishkundu@yahoo.com.ORCID 0000-0002-3756-8623
Ismael Da Costa BarretoNational Health Laboratory, Ministry of Health, Dili, Timor-Leste.
Bernardino da CruzNational HIV Programme, Ministry of Health, Dili, Timor-Leste.
S Siva KumarNational Institute for Research in Tuberculosis, Chennai, India.
Sureshbabu RamalingamNational Health Laboratory, Ministry of Health, Dili, Timor-Leste.
Anna S DeanGlobal Tuberculosis Programme, World Health Organization, Geneva, Switzerland.
Vineet BhatiaWorld Health Organization South East Asia Regional Office, New Delhi, India.
Prabhu SeenivasanNational Institute for Research in Tuberculosis, Chennai, India.
C PadmapriyadarsiniNational Institute for Research in Tuberculosis, Chennai, India.
Olga Tosas AuguetGlobal Tuberculosis Programme, World Health Organization, Geneva, Switzerland.
Universidade da Paz · TLNational Institute of Research in Tuberculosis · INWorld Health Organization · CHWorld Health Organization Regional Office for South-East Asia · IN

Funding

World Health Organization 001
6 · The paper itself

Abstract

backgroundA national drug resistance survey (DRS) was implemented for the first time in Timor-Leste (TL) in 2019. The primary objective of the survey was to assess the prevalence of drug resistance among new and previously treated pulmonary TB patients in the country.

methodsThis nation-wide cross-sectional survey was conducted in 2019 targeting all new and previously treated sputum smear-positive pulmonary TB patients. Sputum samples were submitted to the National TB Reference Laboratory for confirmation of TB and to determine resistance to rifampicin by Xpert MTB/RIF. Culture was performed on solid media, and culture isolates of confirmed TB cases were shipped to the WHO Supranational TB Reference Laboratory in Chennai, India for whole genome sequencing (WGS). Survey summary statistics, data cross-tabulations and analysis of potential risk factors of rifampicin-resistant TB (RR-TB) were conducted using R statistical software (version 3.5.2).

resultsA total of 953 sputum-smear positive patients were enrolled, of which 917 were confirmed as positive for TB by either Xpert MTB/RIF or culture. An electronic web-based system was used for entry and storage of the data. Rifampicin resistance was detected among 0.6% (95% CI 0.2-1.3) of new cases and 2.7% (95% CI 0.5- 8.2) of previously treated cases. WGS was conducted for validation purposes on 65 randomly selected isolates (29% of RR-TB (2/7) and 7% of RS-TB (63/910) by Xpert MTB/RIF or pDST). The original test results agreed with the WGS validation results for 62/64 isolates (97%).

conclusionThe prevalence of RR-TB in Timor-Leste is relatively low compared to the estimated proportions of RR-TB in the WHO South-East Asia Region (2.5% [95% CI 1.9-3.3] among new cases and 14% [95% CI 7.7-21] among previously treated cases). The rapid sputum collection and transportation mechanism implemented in the survey demonstrates its feasibility in low resource settings and should be replicated for routinely transporting TB specimens from microscopy labs to GeneXpert sites. Establishment of in-country capacity for rapid molecular diagnostics for both first- and second-line DST is an immediate need for achieving universal drug susceptibility testing (DST) to guide appropriate patient management.

Indexed as

Antibiotics, AntitubercularMycobacterium tuberculosisTuberculosis, PulmonaryCross-Sectional StudiesDrug Resistance, BacterialHumansIndiaMicrobial Sensitivity TestsRifampinSensitivity and SpecificityTimor-LesteAntibiotics, AntitubercularRifampinAnti-TB Drug Resistance SurveyRifampicin resistanceTimor-LesteWhole genome sequencing

Identifiers

PMID35590345
PMCPMC9119797
OpenAlexW4280560385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.