Evidence map›Paper›PMID 35590237›Full record

ArticleBMC genomics2022

Genome-wide association analysis reveals a novel QTL CsPC1 for pericarp color in cucumber.

Hongyu Huang, Qinqin Yang, Lidong Zhang, Weiliang Kong, Huizhe Wang, Aimin Wei, Shengli Du, Ruihuan Yang, Jiawang Li, Tao Lin and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
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  4. Morphological and Genetic Diversity of Cucumber (Plants (Basel, Switzerland) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Hongyu Huang *State Key Laboratory of Vegetable Germplasm Innovation, Tianjin Kernel Cucumber Research Institute, Tianjin, 300192, China.
Qinqin Yang *China Agricultural University College of Horticulture, Beijing, 100193, China.
Lidong ZhangState Key Laboratory of Vegetable Germplasm Innovation, Tianjin Kernel Cucumber Research Institute, Tianjin, 300192, China.
Weiliang KongState Key Laboratory of Vegetable Germplasm Innovation, Tianjin Kernel Cucumber Research Institute, Tianjin, 300192, China.
Huizhe WangInstitute of Cucumber Research, Tianjin Academy of Agricultural Sciences, Tianjin, 300192, China.
Aimin WeiInstitute of Cucumber Research, Tianjin Academy of Agricultural Sciences, Tianjin, 300192, China.
Shengli DuInstitute of Cucumber Research, Tianjin Academy of Agricultural Sciences, Tianjin, 300192, China.
Ruihuan YangInstitute of Cucumber Research, Tianjin Academy of Agricultural Sciences, Tianjin, 300192, China.
Jiawang LiState Key Laboratory of Vegetable Germplasm Innovation, Tianjin Kernel Cucumber Research Institute, Tianjin, 300192, China.
Tao LinChina Agricultural University College of Horticulture, Beijing, 100193, China.
Xiaolin GengChina Agricultural University College of Horticulture, Beijing, 100193, China. gengxl@cau.edu.cn.
Yuhe LiInstitute of Cucumber Research, Tianjin Academy of Agricultural Sciences, Tianjin, 300192, China. liyuhe@126.com.
Tianjin Academy of Agricultural Sciences · CNChina Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCucumber is an important melon crop in the world, with different pericarp colors. However, the candidate genes and the underlying genetic mechanism for such an important trait in cucumber are unknown. In this study, a locus controlling pericarp color was found on chromosome 3 of cucumber genome.

resultsIn this study, the light green inbred line G35 and the dark green inbred line Q51 were crossed to produce one F

conclusionA major QTL that controls pericarp color in cucumber, CsPC1, was identified in a 94-kb region that harbors the strong candidate gene CsGATA1.

Indexed as

Cucumis sativusChromosome MappingGenome-Wide Association StudyPhenotypePolymorphism, Single NucleotideQuantitative Trait LociBSA-seqCucumberGATA transcription factorGWASPericarp color

Identifiers

PMID35590237
PMCPMC9121586
OpenAlexW4280593738

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.