Evidence map›Paper›PMID 35590028›Full record

ArticleScientific reports2022

Adaptation of the gut pathobiont Enterococcus faecalis to deoxycholate and taurocholate bile acids.

F Repoila, F Le Bohec, C Guérin, C Lacoux, S Tiwari, A K Jaiswal, M Passos Santana, S P Kennedy, B Quinquis, D Rainteau and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 31 citations in OpenAlex.

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  10. Shared metabolism between a bacterial and fungal species that reside in the human gut.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  12. Enhancing Resistance toNutrients · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

F RepoilaUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France. francis.repoila@inrae.fr.
F Le BohecUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France.
C GuérinUniversité Paris-Saclay, INRAE, MaIAGE, 78350, Jouy-en-Josas, France.
C LacouxUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France.
S TiwariUniversidade Federal de Minas Gerais, ICB/UFMG, Minas Gerais, Belo Horizonte, 31270-901, Brazil.
A K JaiswalUniversidade Federal de Minas Gerais, ICB/UFMG, Minas Gerais, Belo Horizonte, 31270-901, Brazil.
M Passos SantanaUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France.
S P KennedyDepartment of Computational Biology, USR3756 CNRS, Institut Pasteur, Paris, France.
B QuinquisUniversité Paris-Saclay, INRAE, MGP, 78350, Jouy-en-Josas, France.
D RainteauSorbonne Université, Inserm, Centre de Recherche Saint-Antoine, CRSA, AP-HP, Hôpital Saint Antoine, 75012, Paris, France.
V JuillardUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France.
S FurlanUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France.
P BoulocUniversité Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198, Gif-sur-Yvette, France.
P NicolasUniversité Paris-Saclay, INRAE, MaIAGE, 78350, Jouy-en-Josas, France.
A MiyoshiUniversidade Federal de Minas Gerais, ICB/UFMG, Minas Gerais, Belo Horizonte, 31270-901, Brazil.
V AzevedoUniversidade Federal de Minas Gerais, ICB/UFMG, Minas Gerais, Belo Horizonte, 31270-901, Brazil.
P SerrorUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France. pascale.serror@inrae.fr.
AgroParisTech · FRUniversidade Federal de Minas Gerais · BRUniversité Paris-Saclay · FRCentre National de la Recherche Scientifique · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterococcus faecalis is a natural inhabitant of the human gastrointestinal tract. This bacterial species is subdominant in a healthy physiological state of the gut microbiota (eubiosis) in adults, but can become dominant and cause infections when the intestinal homeostasis is disrupted (dysbiosis). The relatively high concentrations of bile acids deoxycholate (DCA) and taurocholate (TCA) hallmark eubiosis and dysbiosis, respectively. This study aimed to better understand how E. faecalis adapts to DCA and TCA. We showed that DCA impairs E. faecalis growth and possibly imposes a continuous adjustment in the expression of many essential genes, including a majority of ribosomal proteins. This may account for slow growth and low levels of E. faecalis in the gut. In contrast, TCA had no detectable growth effect. The evolving transcriptome upon TCA adaptation showed the early activation of an oligopeptide permease system (opp2) followed by the adjustment of amino acid and nucleotide metabolisms. We provide evidence that TCA favors the exploitation of oligopeptide resources to fuel amino acid needs in limiting oligopeptide conditions. Altogether, our data suggest that the combined effects of decreased DCA and increased TCA concentrations can contribute to the rise of E. faecalis population during dysbiosis.

Indexed as

Bile Acids and SaltsEnterococcus faecalisAmino AcidsDeoxycholic AcidDysbiosisHumansTaurocholic AcidAmino AcidsBile Acids and SaltsDeoxycholic AcidTaurocholic Acid

Identifiers

PMID35590028
PMCPMC9120511
OpenAlexW4280512993

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.