Evidence map›Paper›PMID 35589928›Full record

ArticleScientific reports2022

Genomic, morphological, and biochemical analyses of a multi-metal resistant but multi-drug susceptible strain of Bordetella petrii from hospital soil.

Urmi Halder, Raju Biswas, Ashutosh Kabiraj, Rajendar Deora, Moitri Let, Rajendra Kr Roy, Annapurna Chitikineni, Krishnendu Majhi, Shrabana Sarkar, Bhramar Dutta and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. The evolutionary genomics of adaptation to stress in wild rhizobium bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. The integrase of genomic island GIFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Urmi HalderMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Raju BiswasMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Ashutosh KabirajMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Rajendar DeoraDepartment of Microbial Infection and Immunity, The Ohio State University, Columbus, OH, 43210, USA.
Moitri LetMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Rajendra Kr RoyMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Annapurna ChitikineniCenter of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, India.
Krishnendu MajhiMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Shrabana SarkarMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Bhramar DuttaMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Anubhab LahaMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Arunava DattaMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Dibyendu KhanMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India.
Rajeev K VarshneyCenter of Excellence in Genomics and Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, 502324, India.
Dipnarayan SahaBiotechnology Unit, Division of Crop Improvement, ICAR-Central Research Institute for Jute and Allied Fibres, Barrackpore, West Bengal, 700121, India.
Saswati ChattopadhyayDepartment of Microbiology, Burdwan Medical College, Burdwan, West Bengal, 713104, India.
Rajib BandopadhyayMicrobiology Section, Department of Botany, The University of Burdwan, Burdwan, West Bengal, 713104, India. rajibindia@gmail.com.
University of Burdwan · INBurdwan Medical College & Hospital · INCentral Research Institute for Jute and Allied Fibres · INInternational Crops Research Institute for the Semi-Arid Tropics · INMurdoch University · AUThe Ohio State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Contamination of soil by antibiotics and heavy metals originating from hospital facilities has emerged as a major cause for the development of resistant microbes. We collected soil samples surrounding a hospital effluent and measured the resistance of bacterial isolates against multiple antibiotics and heavy metals. One strain BMCSI 3 was found to be sensitive to all tested antibiotics. However, it was resistant to many heavy metals and metalloids like cadmium, chromium, copper, mercury, arsenic, and others. This strain was motile and potentially spore-forming. Whole-genome shotgun assembly of BMCSI 3 produced 4.95 Mb genome with 4,638 protein-coding genes. The taxonomic and phylogenetic analysis revealed it, to be a Bordetella petrii strain. Multiple genomic islands carrying mobile genetic elements; coding for heavy metal resistant genes, response regulators or transcription factors, transporters, and multi-drug efflux pumps were identified from the genome. A comparative genomic analysis of BMCSI 3 with annotated genomes of other free-living B. petrii revealed the presence of multiple transposable elements and several genes involved in stress response and metabolism. This study provides insights into how genomic reorganization and plasticity results in evolution of heavy metals resistance by acquiring genes from its natural environment.

Indexed as

Metals, HeavySoilAnti-Bacterial AgentsBordetellaGenomicsHospitalsPhylogenyAnti-Bacterial AgentsMetals, HeavySoil

Identifiers

PMID35589928
PMCPMC9120033
OpenAlexW4280591518

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.