Evidence map›Paper›PMID 35589789›Full record

ArticleScientific reports2022

Diversity, distribution and ecology of fungal communities present in Antarctic lake sediments uncovered by DNA metabarcoding.

Láuren Machado Drumond de Souza, Juan Manuel Lirio, Silvia Herminda Coria, Fabyano Alvares Cardoso Lopes, Peter Convey, Micheline Carvalho-Silva, Fábio Soares de Oliveira, Carlos Augusto Rosa, Paulo Eduardo Aguiar Saraiva Câmara, Luiz Henrique Rosa

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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  10. Cryptic fungal diversity revealed by DNA metabarcoding in historic wooden structures at Whalers Bay, Deception Island, maritime Antarctic.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
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4 · The record

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5 · Who and what money

Authors and funding

10 authors.

Láuren Machado Drumond de SouzaLaboratório de Microbiologia Polar e Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, 31270-901, Brazil.
Juan Manuel LirioInstituto Antártico Argentino, Buenos Aires, Argentina.
Silvia Herminda CoriaInstituto Antártico Argentino, Buenos Aires, Argentina.
Fabyano Alvares Cardoso LopesLaboratório de Microbiologia, Universidade Federal do Tocantins, Porto Nacional, Brasil.
Peter ConveyBritish Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge, CB3 0ET, UK.
Micheline Carvalho-SilvaDepartamento de Botânica, Universidade de Brasília, Brasília, Brasil.
Fábio Soares de OliveiraDepartamento de Geografia, Universidade Federal de Minas, Gerais, Belo Horizonte, MG, Brasil.
Carlos Augusto RosaLaboratório de Microbiologia Polar e Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, 31270-901, Brazil.
Paulo Eduardo Aguiar Saraiva CâmaraDepartamento de Botânica, Universidade de Brasília, Brasília, Brasil.
Luiz Henrique RosaLaboratório de Microbiologia Polar e Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, 31270-901, Brazil. lhrosa@icb.ufmg.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We assessed fungal diversity in sediments obtained from four lakes in the South Shetland Islands and James Ross Island, Antarctica, using DNA metabarcoding. We detected 218 amplicon sequence variants (ASVs) dominated by the phyla Ascomycota, Basidiomycota, Mortierellomycota, Mucoromycota and Chytridiomycota. In addition, the rare phyla Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Monoblepharomycota, Rozellomycota and Zoopagomycota as well as fungal-like Straminopila belonging to the phyla Bacillariophyta and Oomycota were detected. The fungal assemblages were dominated by unknown fungal taxa (Fungal sp. 1 and Fungal sp. 2), followed by Talaromyces rubicundus and Dactylonectria anthuriicola. In general, they displayed high diversity, richness and moderate dominance. Sequences representing saprophytic, pathogenic and symbiotic fungi were detected, including the phytopathogenic fungus D. anthuriicola that was abundant, in the relatively young Soto Lake on Deception Island. The lake sediments studied contained the DNA of rich, diverse and complex fungal communities, including both fungi commonly reported in Antarctica and other taxa considered to be rare. However, as the study was based on the use of environmental DNA, which does not unequivocally confirm the presence of active or viable organisms, further studies using other approaches such as shotgun sequencing are required to elucidate the ecology of fungi in these Antarctic lake sediments.

Indexed as

AscomycotaMycobiomeAntarctic RegionsBiodiversityDNADNA Barcoding, TaxonomicDNA, FungalFungiLakesDNADNA, Fungal

Identifiers

PMID35589789
PMCPMC9120451

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.