Evidence map›Paper›PMID 35587980›Full record

ArticleScience (New York, N.Y.)2022

Universal antigen encoding of T cell activation from high-dimensional cytokine dynamics.

Sooraj R Achar, François X P Bourassa, Thomas J Rademaker, Angela Lee, Taisuke Kondo, Emanuel Salazar-Cavazos, John S Davies, Naomi Taylor, Paul François, Grégoire Altan-Bonnet

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Review
  2. Article
  3. Renaissance of antiviral CD8Nature reviews. Immunology · 2026
    Review
  4. Article
  5. Design principles of the cytotoxic CD8Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Article
  8. Generative epigenetic landscapes map the topology and topography of cell fates.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. T cell receptor specificity landscape revealed through de novo peptide design.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Article
  11. Design principles of the cytotoxic CD8bioRxiv : the preprint server for biology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Sooraj R Achar *Immunodynamics Group, Laboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.ORCID 0000-0003-3425-7501
François X P Bourassa *Department of Physics, McGill University, Montréal, Québec, Canada.ORCID 0000-0002-2757-5870
Thomas J Rademaker *Department of Physics, McGill University, Montréal, Québec, Canada.ORCID 0000-0003-4852-6071
Angela LeeImmunodynamics Group, Laboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.ORCID 0000-0002-0167-8097
Taisuke KondoPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.ORCID 0000-0002-8545-1251
Emanuel Salazar-CavazosImmunodynamics Group, Laboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.ORCID 0000-0003-0850-0651
John S DaviesGenitourinary Malignancies Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.ORCID 0000-0002-9482-1066
Naomi TaylorPediatric Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.ORCID 0000-0002-2459-4558
Paul FrançoisDepartment of Physics, McGill University, Montréal, Québec, Canada.ORCID 0000-0002-2223-839X
Grégoire Altan-BonnetImmunodynamics Group, Laboratory of Integrative Cancer Immunology, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA.ORCID 0000-0002-7283-3162

Funding

Metabolic regulation of T cell effector function and anti-tumor immunotherapyZIABC011923 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI TAYLOR, NAOMI · 2019 to 2025
$9.5M
Phenotypic variability within isogenic population of lymphocytesZIABC011726 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ALTAN-BONNET, GRÉGOIRE · 2016 to 2025
$3.9M
Immunophenotyping by high-dimensional cytometry and machine learningZIABC011807 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ALTAN-BONNET, GRÉGOIRE · 2018 to 2025
$3.6M
Intramural NIH HHS ZIA BC011807Intramural NIH HHS ZIA BC011923
6 · The paper itself

Abstract

Systems immunology lacks a framework with which to derive theoretical understanding from high-dimensional datasets. We combined a robotic platform with machine learning to experimentally measure and theoretically model CD8

Indexed as

AntigensCD8-Positive T-LymphocytesCytokinesLymphocyte ActivationModels, ImmunologicalHumansImmunotherapyMachine LearningReceptors, Antigen, T-CellAntigensCytokinesReceptors, Antigen, T-Cell

Identifiers

PMID35587980
PMCPMC12302665

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.