Evidence map›Paper›PMID 35586607›Full record

ArticleHGG advances2022

Refinements and considerations for trio whole-genome sequence analysis when investigating Mendelian diseases presenting in early childhood.

Courtney E French, Helen Dolling, Karyn Mégy, Alba Sanchis-Juan, Ajay Kumar, Isabelle Delon, Matthew Wakeling, Lucy Mallin, Shruti Agrawal, Topun Austin and 9 more

Open access · goldAbstract read
In one paragraph

Article in HGG advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Observational
  3. Article
  4. Review
  5. A Novel Loss of Function Variant inMolecular syndromology · 2025
    Article
  6. Article
  7. Genetic investigations in cerebral palsy.Developmental medicine and child neurology · 2025
    Review
  8. Article
  9. Epilepsy-associatedFrontiers in neurology · 2025
    Article
  10. Article
  11. Resources and tools for rare disease variant interpretation.Frontiers in molecular biosciences · 2023
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 2 countries.

Courtney E FrenchSchool of Clinical Medicine, University of Cambridge, Cambridge CB2 1TN, UK.
Helen DollingSchool of Clinical Medicine, University of Cambridge, Cambridge CB2 1TN, UK.
Karyn MégySchool of Clinical Medicine, University of Cambridge, Cambridge CB2 1TN, UK.
Alba Sanchis-JuanSchool of Clinical Medicine, University of Cambridge, Cambridge CB2 1TN, UK.
Ajay KumarSchool of Clinical Medicine, University of Cambridge, Cambridge CB2 1TN, UK.
Isabelle DelonCambridge University Hospitals NHS Foundation Trust, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Matthew WakelingInstitute of Biomedical and Clinical Science, University of Exeter Medical School, University of Exeter, Exeter EX4 4PY, UK.
Lucy MallinRoyal Devon and Exeter NHS Foundation Trust, Exeter EX2 5DW, UK.
Shruti AgrawalCambridge University Hospitals NHS Foundation Trust, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Topun AustinSchool of Clinical Medicine, University of Cambridge, Cambridge CB2 1TN, UK.
Florence WalstonNorfolk and Norwich University Hospital NHS Foundation Trust, Norwich NR4 7UY, UK.
Soo-Mi ParkCambridge University Hospitals NHS Foundation Trust, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Alasdair ParkerCambridge University Hospitals NHS Foundation Trust, Cambridge Biomedical Campus, Cambridge CB2 0QQ, UK.
Chinthika PiyasenaGuy's and St Thomas' NHS Foundation Trust, London SE1 9RT, UK.
Kimberley BradburyGuy's and St Thomas' NHS Foundation Trust, London SE1 9RT, UK.
Next Generation Children’s Project Consortium
Sian EllardInstitute of Biomedical and Clinical Science, University of Exeter Medical School, University of Exeter, Exeter EX4 4PY, UK.
David H RowitchSchool of Clinical Medicine, University of Cambridge, Cambridge CB2 1TN, UK.
F Lucy RaymondSchool of Clinical Medicine, University of Cambridge, Cambridge CB2 1TN, UK.
University of Cambridge · GBCambridge University Hospitals NHS Foundation Trust · GBGuy's and St Thomas' NHS Foundation Trust · GBUniversity of Exeter · GBBoston Children's Hospital · USNorfolk and Norwich University Hospital · GBRoyal Devon & Exeter NHS Foundation Trust · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To facilitate early deployment of whole-genome sequencing (WGS) for severely ill children, a standardized pipeline for WGS analysis with timely turnaround and primary care pediatric uptake is needed. We developed a bioinformatics pipeline for comprehensive gene-agnostic trio WGS analysis of children suspected of having an undiagnosed monogenic disease that included detection and interpretation of primary genetic mechanisms of disease, including SNVs/indels, CNVs/SVs, uniparental disomy (UPD), imprinted genes, short tandem repeat expansions, mobile element insertions,

Indexed as

genomicsmendelian disorderspaediatricsrapid diagnostic whole genomerare disease

Identifiers

PMID35586607
PMCPMC9108978
OpenAlexW4224321562

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.