Evidence map›Paper›PMID 35584376›Full record

ArticleBlood advances2022

Allelic complexity of KMT2A partial tandem duplications in acute myeloid leukemia and myelodysplastic syndromes.

Harrison K Tsai, Christopher J Gibson, H Moses Murdock, Phani Davineni, Marian H Harris, Eunice S Wang, Lukasz P Gondek, Annette S Kim, Valentina Nardi, R Coleman Lindsley

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Detection ofCancers · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Targeting the deubiquitinaseOncology reports · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Harrison K TsaiBoston Children's Hospital, Department of Pathology.
Christopher J GibsonDana-Farber Cancer Institute, Department of Medical Oncology, and.
H Moses MurdockDana-Farber Cancer Institute, Department of Medical Oncology, and.ORCID 0000-0003-4098-8968
Phani DavineniBrigham and Women's Hospital, Department of Pathology, Harvard Medical School, Boston, MA.
Marian H HarrisBoston Children's Hospital, Department of Pathology.
Eunice S WangDepartment of Medicine, Roswell Park Comprehensive Cancer Center, Buffalo, NY.
Lukasz P GondekDepartment of Oncology, Johns Hopkins University, Baltimore, MD; and.ORCID 0000-0002-1551-3496
Annette S KimBrigham and Women's Hospital, Department of Pathology, Harvard Medical School, Boston, MA.ORCID 0000-0002-8699-2439
Valentina NardiDepartment of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, MA.
R Coleman LindsleyDana-Farber Cancer Institute, Department of Medical Oncology, and.ORCID 0000-0001-9822-806X
Dana-Farber Cancer Institute · USBoston Children's Hospital · USBrigham and Women's Hospital · USHarvard University · USJohns Hopkins University · USRoswell Park Comprehensive Cancer Center · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Dean G. Tang · 1985 to 2026
$116.6M
Targeting SYK Kinase in AMLP50CA206963 · NCI · DANA-FARBER CANCER INST · PI STEGMAIER, KIMBERLY · 2017 to 2021
$10.6M
Systems Biology of Bone Marrow Failure and MDS for Precision MedicineRC2DK122533 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI FIGUEROA, MARIA EUGENIA, FLEMING, MARK D · 2019 to 2023
$6.4M
Determining the Role of BCOR Mutations in Myeloid MalignanciesK08CA204734 · NCI · DANA-FARBER CANCER INST · PI LINDSLEY, ROBERT COLEMAN · 2016 to 2020
$813k
The Impact of Donor Hematopoietic DNMT3A Mutations in Stem Cell Transplant RecipientsK08CA263555 · NCI · DANA-FARBER CANCER INST · PI GIBSON, CHRISTOPHER JAMES · 2021 to 2023
$660k
NCI NIH HHS K08 CA204734NCI NIH HHS K08 CA263555NCI NIH HHS P30 CA016056NCI NIH HHS P50 CA206963NIDDK NIH HHS RC2 DK122533
6 · The paper itself

Abstract

KMT2A partial tandem duplication (KMT2A-PTD) is an adverse risk factor in acute myeloid leukemia (AML) and myelodysplastic syndrome (MDS), a potential therapeutic target, and an attractive marker of measurable residual disease. High initial KMT2A-PTD RNA levels have been linked to poor prognosis, but mechanisms regulating KMT2A-PTD expression are not well understood. Although KMT2A-PTD has been reported to affect only a single allele, it has been theorized but not proven that genomic gains of a monoallelic KMT2A-PTD may occur, thereby potentially driving high expression and disease progression. In this study, we identified 94 patients with KMT2A-PTDs using targeted DNA next-generation sequencing (NGS) and found that 16% (15/94) had complex secondary events, including copy-neutral loss of heterozygosity and selective gain involving the KMT2A-PTD allele. High copy numbers indicating complexity were significantly enriched in AML vs MDS and correlated with higher RNA expression. Moreover, in serial samples, complexity was associated with relapse and secondary transformation. Taken together, we provide approaches to integrate quantitative and allelic assessment of KMT2A-PTDs into targeted DNA NGS and demonstrate that secondary genetic events occur in KMT2A-PTD by multiple mechanisms that may be linked to myeloid disease progression by driving increased expression from the affected allele.

Indexed as

Histone-Lysine N-MethyltransferaseLeukemia, Myeloid, AcuteMyelodysplastic SyndromesMyeloid-Lymphoid Leukemia ProteinAllelesDisease ProgressionGene DuplicationHumansRNAHistone-Lysine N-MethyltransferaseKMT2A protein, humanMyeloid-Lymphoid Leukemia ProteinRNA

Identifiers

PMID35584376
PMCPMC9327559
OpenAlexW4280563830

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.