Evidence map›Paper›PMID 35584193›Full record

ArticlePLoS pathogens2022

Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region.

Clara T Schoeder, Pavlo Gilchuk, Amandeep K Sangha, Kaitlyn V Ledwitch, Delphine C Malherbe, Xuan Zhang, Elad Binshtein, Lauren E Williamson, Cristina E Martina, Jinhui Dong and 10 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Strategies of rational and structure-driven vaccine design for Arenaviruses.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2024
    Review
  12. Article
  13. Article
  14. Computational modeling and prediction of deletion mutants.Structure (London, England : 1993) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 2 countries.

Clara T SchoederDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.ORCID 0000-0002-4664-961X
Pavlo GilchukVanderbilt Vaccine Center, Vanderbilt University Medical Center, Tennessee, United States of America.
Amandeep K SanghaDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.
Kaitlyn V LedwitchDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.
Delphine C MalherbeDepartment of Pathology, University of Texas Medical Branch, Galveston, Texas, United States of America.
Xuan ZhangDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.
Elad BinshteinVanderbilt Vaccine Center, Vanderbilt University Medical Center, Tennessee, United States of America.
Lauren E WilliamsonVanderbilt Vaccine Center, Vanderbilt University Medical Center, Tennessee, United States of America.
Cristina E MartinaDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.
Jinhui DongVanderbilt Vaccine Center, Vanderbilt University Medical Center, Tennessee, United States of America.
Erica ArmstrongVanderbilt Vaccine Center, Vanderbilt University Medical Center, Tennessee, United States of America.
Rachel SuttonVanderbilt Vaccine Center, Vanderbilt University Medical Center, Tennessee, United States of America.
Rachel NargiVanderbilt Vaccine Center, Vanderbilt University Medical Center, Tennessee, United States of America.
Jessica RodriguezVanderbilt Vaccine Center, Vanderbilt University Medical Center, Tennessee, United States of America.
Natalia KuzminaDepartment of Pathology, University of Texas Medical Branch, Galveston, Texas, United States of America.
Brooke FialaDepartment of Biochemistry, University of Washington, Seattle, Washington, United States of America.
Neil P KingDepartment of Biochemistry, University of Washington, Seattle, Washington, United States of America.
Alexander BukreyevDepartment of Pathology, University of Texas Medical Branch, Galveston, Texas, United States of America.
James E CroweVanderbilt Vaccine Center, Vanderbilt University Medical Center, Tennessee, United States of America.ORCID 0000-0002-0049-1079
Jens MeilerDepartment of Chemistry, Vanderbilt University, Nashville, Tennessee, United States of America.ORCID 0000-0001-8945-193X
Vanderbilt University Medical Center · USVanderbilt University · USGalveston College · USUniversity of Washington · US

Funding

Structure based design of antibodies and vaccinesU19AI117905 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SCHIEF, WILLIAM R. · 2015 to 2019
$12.0M
Structure based design of trimer interface epitope focused universal influenza vaccinesU01AI150739 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CROWE, JAMES E · 2020 to 2024
$6.1M
Epitope-Based Design and Modified RNA Platform for Bivalent Marburgvirus VaccineR01AI141661 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BUKREYEV, ALEXANDER, CROWE, JAMES E · 2019 to 2023
$3.9M
Console upgrades for biological NMR spectrometersS10RR025677 · NCRR · VANDERBILT UNIVERSITY · PI SANDERS, CHARLES R · 2009 to 2009
$460k
NCRR NIH HHS S10 RR025677NIAID NIH HHS R01 AI141661NIAID NIH HHS U01 AI150739NIAID NIH HHS U19 AI117905
6 · The paper itself

Abstract

The three human pathogenic ebolaviruses: Zaire (EBOV), Bundibugyo (BDBV), and Sudan (SUDV) virus, cause severe disease with high fatality rates. Epitopes of ebolavirus glycoprotein (GP) recognized by antibodies with binding breadth for all three ebolaviruses are of major interest for rational vaccine design. In particular, the heptad repeat 2 -membrane-proximal external region (HR2-MPER) epitope is relatively conserved between EBOV, BDBV, and SUDV GP and targeted by human broadly-neutralizing antibodies. To study whether this epitope can serve as an immunogen for the elicitation of broadly-reactive antibody responses, protein design in Rosetta was employed to transplant the HR2-MPER epitope identified from a co-crystal structure with the known broadly-reactive monoclonal antibody (mAb) BDBV223 onto smaller scaffold proteins. From computational analysis, selected immunogen designs were produced as recombinant proteins and functionally validated, leading to the identification of a sterile alpha motif (SAM) domain displaying the BDBV-HR2-MPER epitope near its C terminus as a promising candidate. The immunogen was fused to one component of a self-assembling, two-component nanoparticle and tested for immunogenicity in rabbits. Robust titers of cross-reactive serum antibodies to BDBV and EBOV GPs and moderate titers to SUDV GP were induced following immunization. To confirm the structural composition of the immunogens, solution NMR studies were conducted and revealed structural flexibility in the C-terminal residues of the epitope. Overall, our study represents the first report on an epitope-focused immunogen design based on the structurally challenging BDBV-HR2-MPER epitope.

Indexed as

EbolavirusHemorrhagic Fever, EbolaAnimalsAntibodies, NeutralizingAntibodies, ViralEpitopesGlycoproteinsRabbitsAntibodies, NeutralizingAntibodies, ViralEpitopesGlycoproteins

Identifiers

PMID35584193
PMCPMC9170092
OpenAlexW4280591187

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.