Evidence map›Paper›PMID 35584121›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Gene discovery and virus-induced gene silencing reveal branched pathways to major classes of bioactive diterpenoids in

Tomasz Czechowski, Edith Forestier, Sandesh H Swamidatta, Alison D Gilday, Amy Cording, Tony R Larson, David Harvey, Yi Li, Zhesi He, Andrew J King and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Characterization of two key cytochrome P450 enzymes inSynthetic and systems biotechnology · 2027
    Article
  2. Review
  3. Ingenane Diterpenoids fromMolecules (Basel, Switzerland) · 2026
    Article
  4. Article
  5. Evolution of a Synthetic Strategy for Complex Diterpenes fromJournal of the American Chemical Society · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Chemical Constituents ofMetabolites · 2023
    Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 2 countries.

Tomasz CzechowskiDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.
Edith ForestierDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.
Sandesh H SwamidattaDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.
Alison D GildayDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0003-2680-0228
Amy CordingDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0002-3002-9213
Tony R LarsonDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0003-1337-3482
David HarveyDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.
Yi LiDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0002-4526-7185
Zhesi HeDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.
Andrew J KingDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.
Geoffrey D BrownDepartment of Chemistry, University of Reading, Reading RG6 6AD, United Kingdom.
Ian A GrahamDepartment of Biology, Centre for Novel Agricultural Products, University of York, York YO10 5DD, United Kingdom.ORCID 0000-0003-4007-1770
University of North Texas · US

Funding

Biotechnology and Biological Sciences Research Council BB/M018210/01
6 · The paper itself

Abstract

Most macro- and polycyclic Euphorbiaceae diterpenoids derive from the common C20 precursor casbene. While the biosynthetic pathway from casbene to the lathyrane jolkinol C is characterized, pathways to other more complex classes of bioactive diterpenoids remain to be elucidated. A metabolomics-guided transcriptomic approach and a genomics approach that led to the discovery of two casbene-derived diterpenoid gene clusters yielded a total of 68 candidate genes that were transiently expressed in Nicotiana benthamiana for activity toward jolkinol C and other lathyranes. We report two short-chain dehydrogenases/reductases (SDRs), identified by RNA sequencing to be highly expressed in Euphorbia peplus latex. One of these, EpSDR-5, is a C3-ketoreductase, converting jolkinol C to the lathyrane jolkinol E. Gene function of EpSDR-5 was further confirmed by heterologous expression in Saccharomyces cerevisiae. To investigate the in vivo role of EpSDR-5, we established virus-induced gene silencing (VIGS) in E. peplus, resulting in a significant reduction in jatrophanes and a corresponding increase in ingenanes. VIGS of Casbene Synthase results in a major reduction in both jatrophanes and ingenanes, the two most abundant classes of E. peplus diterpenoids. VIGS of CYP71D365 had a similar effect, consistent with the previously determined role of this gene in the pathway to jolkinol C. These results point to jolkinol C being a branch point intermediate in the pathways to ingenanes and jatrophanes with EpSDR-5 responsible for the first step from jolkinol C to jatrophane production.

Indexed as

DiterpenesEuphorbiaGene SilencingGenetic Association StudiesMetabolomicsMolecular StructureDiterpenescytochrome P450soxidationshort-chain dehydrogenases/reductasesterpenoidsvirus-induced gene silencing

Identifiers

PMID35584121
PMCPMC9173813
OpenAlexW4280595711

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.