Evidence map›Paper›PMID 35583788›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Analysis of Virus Spread Around the Cell Death Zone at Spatiotemporal Resolution Using Confocal Microscopy.

Tjaša Lukan, Anna Coll, Špela Baebler, Kristina Gruden

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tjaša LukanDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia. tjasa.lukan@nib.si.
Anna CollDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Špela BaeblerDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Kristina GrudenDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
National Institute of Biology · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The role of programmed cell death (PCD) in hypersensitive response (HR)-conferred resistance depends on the type of host-pathogen interaction and therefore has to be studied for each individual pathosystem. Here we present and explain the protocol for studying the role of PCD in HR-conferred resistance in potato plants in the interaction with the viral pathogen. As an experimental system, we use genotype Rywal, where the virus spread is restricted and HR PCD develops 3 days post potato virus Y (PVY) inoculation. As a control of virus multiplication and spread, we include its transgenic counterpart impaired in salicylic acid (SA) accumulation (NahG-Rywal), in which the HR-PCD occurs but the spread of the virus is not restricted. To follow the occurrence of virus-infected cells and/or virus multiplication outside the cell death zone, we use GFP-tagged PVY (PVY-N605(123)-GFP) which can be monitored by confocal microscopy. Any other plant-pathogen system which results in PCD development could be studied using a modified version of this protocol.

Indexed as

PotyvirusSolanum tuberosumCell DeathDNA VirusesMicroscopy, ConfocalPlant DiseasesSalicylic AcidSalicylic AcidConfocal microscopyGFP-tagged potato virus YHR cell deathPotato cv. RywalResistance

Identifiers

PMID35583788
OpenAlexW4285178896

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.