Evidence map›Paper›PMID 35583124›Full record

ArticleSmall methods2022

A Class of Shark-Derived Single-Domain Antibodies can Broadly Neutralize SARS-Related Coronaviruses and the Structural Basis of Neutralization and Omicron Escape.

Bo Feng, Zhilong Chen, Jing Sun, Tingting Xu, Qian Wang, Haisu Yi, Xuefeng Niu, Jiabin Zhu, Mengzhu Fan, Ruitian Hou and 12 more

Abstract read
In one paragraph

Article in Small methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Broad-Spectrum Engineered Multivalent Nanobodies Against SARS-CoV-1/2.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  5. NanoLAS: a comprehensive nanobody database with data integration, consolidation and application.Database : the journal of biological databases and curation · 2024
    Article
  6. Review
  7. Review
  8. Article
  9. Identification of nurse shark VFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2023
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Bo FengState Key Laboratory of Respiratory Disease, Institute of Infectious Disease, Guangzhou 8th People's Hospital & The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
Zhilong ChenSchool of Medicine & School of Biomedical Sciences, Huaqiao University, Quanzhou, China.
Jing SunState Key Laboratory of Respiratory Disease, Institute of Infectious Disease, Guangzhou 8th People's Hospital & The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
Tingting XuState Key Laboratory of Respiratory Disease, Guangdong Provincial Key Laboratory of Computational Biomedicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China.
Qian WangState Key Laboratory of Respiratory Disease, Institute of Infectious Disease, Guangzhou 8th People's Hospital & The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
Haisu YiState Key Laboratory of Respiratory Disease, Institute of Infectious Disease, Guangzhou 8th People's Hospital & The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
Xuefeng NiuState Key Laboratory of Respiratory Disease, Institute of Infectious Disease, Guangzhou 8th People's Hospital & The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
Jiabin ZhuState Key Laboratory of Respiratory Disease, Institute of Infectious Disease, Guangzhou 8th People's Hospital & The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
Mengzhu FanSchool of Medicine & School of Biomedical Sciences, Huaqiao University, Quanzhou, China.
Ruitian HouState Key Laboratory of Respiratory Disease, Guangdong Provincial Key Laboratory of Computational Biomedicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China.
Ying ShaoSchool of Medicine & School of Biomedical Sciences, Huaqiao University, Quanzhou, China.
Sihui HuangSchool of Medicine & School of Biomedical Sciences, Huaqiao University, Quanzhou, China.
Cuiyun LiState Key Laboratory of Respiratory Disease, Guangdong Provincial Key Laboratory of Computational Biomedicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China.
Peiyu HuGuangzhou Laboratory, Guangzhou, China.
Pingqian ZhengGuangzhou Laboratory, Guangzhou, China.
Ping HeState Key Laboratory of Respiratory Disease, Guangdong Provincial Key Laboratory of Computational Biomedicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China.
Jia LuoXiamen United Institutes of Respiratory Health, Xiamen, China.
Qihong YanState Key Laboratory of Respiratory Disease, Guangdong Provincial Key Laboratory of Computational Biomedicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China.
Xiaoli XiongState Key Laboratory of Respiratory Disease, Guangdong Provincial Key Laboratory of Computational Biomedicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China.
Jinsong LiuState Key Laboratory of Respiratory Disease, Guangdong Provincial Key Laboratory of Computational Biomedicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China.
Jincun ZhaoState Key Laboratory of Respiratory Disease, Institute of Infectious Disease, Guangzhou 8th People's Hospital & The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.
Ling ChenState Key Laboratory of Respiratory Disease, Institute of Infectious Disease, Guangzhou 8th People's Hospital & The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, China.ORCID 0000-0003-1485-1626

Funding

China Postdoctoral Science Foundation 2020T130023ZXChinese Academy of Sciences Pilot Strategic Science and Technology Projects XDB29050701grant from the State Key Lab of Respiratory Disease, Guangzhou Medical University SKLRD-QN-201901Guangdong-Hong Kong-Macau Joint Laboratory of Respiratory Infectious Disease 2019B121205010Guangzhou Institute of Respiratory Health Open Project 2020GIRHHMS08Guangzhou Science and Technology Program Key Projects 2021904020037Youth Innovation Promotion Association of CAS 2021357
6 · The paper itself

Abstract

The identification of a novel class of shark-derived single domain antibodies, named vnarbodies that show picomolar affinities binding to the receptor binding domain (RBD) of Wuhan and Alpha, Beta, Kappa, Delta, Delta-plus, and Lambda variants, is reported. Vnarbody 20G6 and 17F6 have broad neutralizing activities against all these SARS-CoV-2 viruses as well as other sarbecoviruses, including Pangolin coronavirus and Bat coronavirus. Intranasal administration of 20G6 effectively protects mice from the challenges of SARS-CoV-2 Wuhan and Beta variants. 20G6 and 17F6 contain a unique "WXGY" motif in the complementary determining region 3 that binds to a hidden epitope on RBD, which is highly conserved in sarbecoviruses through a novel β-sheet interaction. It is found that the S375F mutation on Omicron RBD disrupts the structure of β-strand, thus impair the binding with 20G6. The study demonstrates that shark-derived vnarbodies offer a prophylactic and therapeutic option against most SARS-CoV-2 variants and provide insights into antibody evasion by the Omicron variant.

Indexed as

COVID-19SharksSingle-Domain AntibodiesAnimalsMiceNeutralization TestsSARS-CoV-2Spike Glycoprotein, CoronavirusSingle-Domain AntibodiesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2neutralizationreceptor binding domain (RBD)SARS-CoV-2variants of concerns (VOCs)

Identifiers

PMID35583124
PMCPMC9347709

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.