Evidence map›Paper›PMID 35582932›Full record

ArticleInfluenza and other respiratory viruses2022

Genotyping of respiratory syncytial virus among influenza-like illness and severe acute respiratory infection cases of children in the Philippines from 2006 to 2016.

Jonjee Calaor-Morin, Vina Lea Arguelles, Janiza Lianne Foronda, Alvin Tan, Evelina Lagamayo, Clyde Dapat, Socorro Lupisan

Open access · goldAbstract read
In one paragraph

Article in Influenza and other respiratory viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Jonjee Calaor-MorinDepartment of Virology, Research Institute for Tropical Medicine, Muntinlupa, Philippines.ORCID 0000-0001-8899-457X
Vina Lea ArguellesDepartment of Virology, Research Institute for Tropical Medicine, Muntinlupa, Philippines.
Janiza Lianne ForondaDepartment of Virology, Research Institute for Tropical Medicine, Muntinlupa, Philippines.ORCID 0000-0003-2051-4319
Alvin TanDepartment of Epidemiology and Biostatistics, Research Institute for Tropical Medicine, Philippines.
Evelina LagamayoDepartment of Medicine, University of Santo Tomas, Manila, Philippines.
Clyde DapatRITM-Tohoku Collaborating Research Center on Emerging and Re-emerging Infectious Diseases, Muntinlupa, Philippines.ORCID 0000-0002-7616-4680
Socorro LupisanDepartment of Virology, Research Institute for Tropical Medicine, Muntinlupa, Philippines.
Research Institute for Tropical Medicine · PHNational University of Computer and Emerging Sciences · PKUniversity of Santo Tomas · PH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveRespiratory syncytial virus (RSV) is a leading cause of severe lower respiratory infection, and therefore, a major threat to global health. This study determined the epidemiological and molecular characteristics of RSV among cases of influenza-like illness (ILI) and severe acute respiratory infection (SARI) among children in the Philippines.

methodThe study included archived nasopharyngeal swab and oropharyngeal swab samples collected from patients under the age of five who are presented with ILI or SARI for the period of 2006-2016. Swabs were examined for RSV subgroup by multiplex real-time qRT-PCR. Partial genome sequencing and phylogenetic analyses of the second hypervariable region (HVR) of the G gene were used to determine the genotype of RSV isolates.

resultsA total of 1036 representative samples from all sites were selected and tested. Of these samples, 122 were RSV-positive at 11.8% prevalence rate, and 58.2% (71/122) were classified as RSV-A. Six genotypes were identified, which include NA1 (27/122, 22.1%), ON1 (5/122, 4.1%), GA2 (1/122, 0.8%), and GA5 (1/122, 0.8%) for RSV-A; and BA2 (13/122, 10.7%) and BA9 (1/122, 0.8%) for RSV-B. Most RSV-related cases were significantly associated with clinical characteristics such as runny nose (88.1% RSV vs. 11.9% non-RSV: p value = 0.021), pneumonia (80.6% RSV vs. 19.4% non-RSV; p value = 0.015), and bronchitis (71.7% RSV vs. 28.3% non-RSV; p value < 0.001). Increased RSV-related cases were observed among children below 24 months old.

conclusionThe RSV trend and genetic variability in the Philippines resembles a similar pattern of transmission globally.

Indexed as

Influenza, HumanPneumoniaRespiratory Syncytial Virus, HumanRespiratory Syncytial Virus InfectionsVirus DiseasesChildChild, PreschoolGenotypeHumansInfantPhilippinesPhylogenygenotype shiftsgenotype variationsinfluenza-like illnessRSV-ARSV-Bsevere acute respiratory infection

Identifiers

PMID35582932
PMCPMC9343341
OpenAlexW4280591168

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.