Evidence map›Paper›PMID 35581287›Full record

ArticleScientific reports2022

Chromatin structure predicts survival in glioma patients.

Matthew C Garrett, Rebecca Albano, Troy Carnwath, Sanjit Shah, Daniel Woo, Michael Lamba, David R Plas, Aditi Paranjpe, Krishna Roskin, Chuntao Zhao and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Matthew C Garrett *Department of Neurosurgery, University of Cincinnati College of Medicine, Cincinnati, OH, 45267, USA. matthew.garrett2@ketteringhealth.org.ORCID http://orcid.org/0000-0003-4567-7907
Rebecca Albano *Department of Neurosurgery, University of Cincinnati College of Medicine, Cincinnati, OH, 45267, USA.
Troy CarnwathUniversity of Cincinnati College of Medicine, Cincinnati, OH, 45267, USA.
Sanjit ShahDepartment of Neurosurgery, University of Cincinnati College of Medicine, Cincinnati, OH, 45267, USA.
Daniel WooDepartment of Neurology, University of Cincinnati College of Medicine, Cincinnati, OH, 45267, USA.
Michael LambaDepartment of Radiation Oncology, University of Cincinnati, Cincinnati, OH, 45267, USA.
David R PlasDepartment of Cancer Biology, University of Cincinnati, Cincinnati, OH, 45267, USA.
Aditi ParanjpeDivision of Biomedical Informatics, Bioinformatics Collaborative Services, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Krishna RoskinDivision of Biomedical Informatics, Bioinformatics Collaborative Services, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.
Chuntao ZhaoDepartment of Cancer Biology, Cincinnati Children's Hospital, Cincinnati, OH, 45267, USA.
Richard LuDepartment of Cancer Biology, Cincinnati Children's Hospital, Cincinnati, OH, 45267, USA.
University of Cincinnati Medical Center · USCincinnati Children's Hospital Medical Center · USUniversity of Cincinnati · US

Funding

Post-Graduate Hematology/Oncology Translational (PG-HOT) Training ProgramT32CA236764 · NCI · UNIVERSITY OF CINCINNATI · PI QI, XIAOYANG, SCAGLIONI, PIER PAOLO · 2019 to 2023
$2.1M
Co-targeting S6 and TAM kinases in PTEN-deficient glioblastomaR01CA239657 · NCI · UNIVERSITY OF CINCINNATI · PI PLAS, DAVID R · 2020 to 2024
$2.1M
NCI NIH HHS R01 CA239657NCI NIH HHS T32 CA236764
6 · The paper itself

Abstract

The pathological changes in epigenetics and gene regulation that accompany the progression of low-grade to high-grade gliomas are under-studied. The authors use a large set of paired atac-seq and RNA-seq data from surgically resected glioma specimens to infer gene regulatory relationships in glioma. Thirty-eight glioma patient samples underwent atac-seq sequencing and 16 samples underwent additional RNA-seq analysis. Using an atac-seq/RNA-seq correlation matrix, atac-seq peaks were paired with genes based on high correlation values (|r

Indexed as

GliomaChromatinChromatin Immunoprecipitation SequencingDNAHumansTranscription FactorsChromatinDNATranscription Factors

Identifiers

PMID35581287
PMCPMC9114333
OpenAlexW4280507509

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.