Evidence map›Paper›PMID 35581239›Full record

ArticleScientific reports2022

Characterization of NRPS and PKS genes involved in the biosynthesis of SMs in Alternaria dauci including the phytotoxic polyketide aldaulactone.

Julia Courtial, Jean-Jacques Helesbeux, Hugo Oudart, Sophie Aligon, Muriel Bahut, Bruno Hamon, Guillaume N'Guyen, Sandrine Pigné, Ahmed G Hussain, Claire Pascouau and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Characterization and Genome Analysis ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  5. Article
  6. Biosynthesis of Cytosporones in Leotiomycetous Filamentous Fungi.Journal of the American Chemical Society · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Julia CourtialUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Jean-Jacques HelesbeuxSubstances d'Origine Naturelle et Analogues Structuraux, SFR4207 QUASAV, Université d'Angers, Angers, France.
Hugo OudartUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Sophie AligonUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Muriel BahutANAN, SFR 4207 QUASAV, Beaucouzé, France.
Bruno HamonUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Guillaume N'GuyenUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Sandrine PignéUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Ahmed G HussainUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Claire PascouauUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Nelly Bataillé-SimoneauUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Jérôme CollemareWesterdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584CT, Utrecht, The Netherlands.
Romain BerruyerUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France. romain.berruyer@univ-angers.fr.
Pascal PoupardUniv Angers, Institut Agro, INRAE, IRHS, SFR 4207 QuaSaV, 49000, Angers, France.
Institut Agro Rennes-Angers · FRL'Institut AgroInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRUniversité d'Angers · FRWesterdijk Fungal Biodiversity Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alternaria dauci is a Dothideomycete fungus, causal agent of carrot leaf blight. As a member of the Alternaria genus, known to produce a lot of secondary metabolite toxins, A. dauci is also supposed to synthetize host specific and non-host specific toxins playing a crucial role in pathogenicity. This study provides the first reviewing of secondary metabolism genetic basis in the Alternaria genus by prediction of 55 different putative core genes. Interestingly, aldaulactone, a phytotoxic benzenediol lactone from A. dauci, was demonstrated as important in pathogenicity and in carrot partial resistance to this fungus. As nothing is known about aldaulactone biosynthesis, bioinformatic analyses on a publicly available A. dauci genome data set that were reassembled, thanks to a transcriptome data set described here, allowed to identify 19 putative secondary metabolism clusters. We exploited phylogeny to pinpoint cluster 8 as a candidate in aldaulactone biosynthesis. This cluster contains AdPKS7 and AdPKS8, homologs with genes encoding a reducing and a non-reducing polyketide synthase. Clusters containing such a pair of PKS genes have been identified in the biosynthesis of resorcylic acid lactones or dihydroxyphenylacetic acid lactones. AdPKS7 and AdPKS8 gene expression patterns correlated with aldaulactone production in different experimental conditions. The present results highly suggest that both genes are responsible for aldaulactone biosynthesis.

Indexed as

Daucus carotaPolyketidesToxins, BiologicalAlternariaPolyketide SynthasesSecondary MetabolismPolyketidesPolyketide SynthasesToxins, Biological

Identifiers

PMID35581239
PMCPMC9114375
OpenAlexW4280565021

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.