Evidence map›Paper›PMID 35579817›Full record

ArticleDrug safety2022

Automated Drug Coding Using Artificial Intelligence: An Evaluation of WHODrug Koda on Adverse Event Reports.

Eva-Lisa Meldau, Shachi Bista, Emma Rofors, Lucie M Gattepaille

Abstract read
In one paragraph

Article in Drug safety, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Eva-Lisa MeldauUppsala Monitoring Centre, Uppsala, Sweden. Eva-Lisa.Meldau@who-umc.org.ORCID http://orcid.org/0000-0003-0268-7769
Shachi BistaUppsala Monitoring Centre, Uppsala, Sweden.ORCID http://orcid.org/0000-0001-8319-4936
Emma RoforsUppsala Monitoring Centre, Uppsala, Sweden.
Lucie M GattepailleUppsala Monitoring Centre, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-6046-2181

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionCoding medicinal products described on adverse event (AE) reports to specific entries in standardised drug dictionaries, such as WHODrug Global, is a time-consuming step in case processing activities despite its potential for automation. Many organisations are already partially automating drug coding using text-processing methods and synonym lists, however addressing challenges such as misspellings, abbreviations or ambiguous trade names requires more advanced methods. WHODrug Koda is a drug coding engine using text-processing algorithms, built-in coding rules and machine learning to code drug verbatims to WHODrug Global.

objectiveOur aim was to evaluate the drug coding performance of WHODrug Koda on AE reports from VigiBase, the World Health Organization's global database of individual case safety reports, in terms of level of automation and coding quality.

methodsKoda was evaluated on 4.8 million drug entries from VigiBase. Automation level was computed as the proportion of drug entries automatically coded by Koda and was compared to a simple case-insensitive text-matching algorithm. Coding quality was evaluated in terms of coding accuracy, by comparing Koda's prediction to the WHODrug entries found on the AE reports in VigiBase. To better understand the cases in which Koda's coding results did not match with the WHODrug entries in VigiBase, a manual assessment of 600 samples of disagreeing encodings was performed by two teams of expert drug coders.

resultsCompared with a simple direct-match baseline, Koda can increase the automation level from 61% to 89%, while providing high coding quality with an accuracy of 97%.

conclusionsEven though Koda was designed for use in clinical trials, Koda achieves automation level and coding quality for drug coding of AE reports comparable with the performance observed in a previous evaluation of Koda on clinical trial data. Koda can thus help organisations to automate their drug coding of AE reports to a large degree.

Indexed as

AlgorithmsArtificial IntelligenceAutomationDatabases, FactualHumansMachine Learning

Identifiers

PMID35579817
PMCPMC9114093

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.